Functional Genomics Tools

MetNet is software to visualize, explore, statistically analyze and model transcriptomics, proteomics and metabolomics data in the context of a growing metabolic and regulatory network map of Arabidopsis, Soybean, and other species.

NSF logo National Science Foundation
MetNet: Integrated Software for Arabidopsis Systems Biology
Wurtele (PI), Berleant, Cook, Dickerson, Miller


Plant and Microbial Metabolomics Resource

           MetNet Online

Search the MetNet database from your browser


Identify inclusion relations between multiple datasets and extracts shared members.

           MetNet Plugin for            CellDesigner

View and editing pathways from MetNetDB within Cell Designer

           MetNet Plugins for            Cytoscape

Displays and models 'omics data with MetNetDB map


Statistical analysis and visualization of 'omics data with MetNetDB map


Textmining for MedLine and biological literature


Gene annotations


Analyse patterns in public gene expression data

           PubMed Assistant

A Biologist-Friendly Interface for Enhanced PubMed Search


Curator tool/database of a regulatory and metabolic network of Arabidopsis

     MetNet Exchange