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Regulon information related genes

Regulon information related genes

Locus ID TAIR Annotation Gene Name Regulon Subcellular Location PPDB Location TargetP Predicted SubcellLoc BLink PFAM Uni-PROT GO Cellular Component GO Molecular Function GO Biological Process MetNet Pathways MetNet Comments References
AT5G17520

ROOT CAP 1 (RCP1)
FUNCTIONS IN: maltose transmembrane transporter activity
INVOLVED IN: in 7 processes
LOCATED IN: chloroplast inner membrane, chloroplast envelope
EXPRESSED IN: 23 plant structures
EXPRESSED DURING: 15 growth stages
BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17523.1)
Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12
Bacteria - 1396
Metazoa - 17338
Fungi - 3422
Plants - 5037
Viruses - 0
Other Eukaryotes - 2996 (source: NCBI BLink).

root cap 1 (RCP1);
2 - photosynthesisSUBAPPDB;Chloroplast (C)gi|18418329;
Q9LF50;

AT4G05210

Trimeric LpxA-like enzymes superfamily protein
FUNCTIONS IN: transferase activity
INVOLVED IN: biological_process unknown
LOCATED IN: cellular_component unknown
EXPRESSED IN: 13 plant structures
EXPRESSED DURING: 8 growth stages
CONTAINS InterPro DOMAIN/s: Hexapeptide transferase, conserved site (InterPro:IPR018357), Trimeric LpxA-like (InterPro:IPR011004), Bacterial transferase hexapeptide repeat (InterPro:IPR001451)
BEST Arabidopsis thaliana protein match is: Trimeric LpxA-like enzymes superfamily protein (TAIR:AT4G21220.1)
Has 11511 Blast hits to 11440 proteins in 1956 species: Archae - 52
Bacteria - 7646
Metazoa - 8
Fungi - 29
Plants - 63
Viruses - 3
Other Eukaryotes - 3710 (source: NCBI BLink).

Trimeric LpxA-like enzymes superfamily protein;
SUBAPPDB; gi|334186379;
Hexapep;
Q9M0X4;

synthesis of LipidA

AT5G65050

AGAMOUS-like 31 (AGL31)
FUNCTIONS IN: sequence-specific DNA binding transcription factor activity
INVOLVED IN: negative regulation of vernalization response, negative regulation of flower development, regulation of transcription, DNA-dependent, vernalization response, regulation of transcription
LOCATED IN: nucleus
EXPRESSED IN: 7 plant structures
CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487)
BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G65060.1)
Has 6438 Blast hits to 6434 proteins in 775 species: Archae - 0
Bacteria - 2
Metazoa - 623
Fungi - 300
Plants - 5440
Viruses - 0
Other Eukaryotes - 73 (source: NCBI BLink).
AGAMOUS-like 31 (AGL31)
CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487)
BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G65060.1)
Has 6764 Blast hits to 6759 proteins in 854 species: Archae - 0
Bacteria - 0
Metazoa - 623
Fungi - 300
Plants - 5766
Viruses - 0
Other Eukaryotes - 75 (source: NCBI BLink).
AGAMOUS-like 31 (AGL31)
CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100), Transcription factor, K-box (InterPro:IPR002487)
BEST Arabidopsis thaliana protein match is: K-box region and MADS-box transcription factor family protein (TAIR:AT5G65060.1)
Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12
Bacteria - 1396
Metazoa - 17338
Fungi - 3422
Plants - 5037
Viruses - 0
Other Eukaryotes - 2996 (source: NCBI BLink).

AGAMOUS-like 31;
SUBAPPDB; gi|30698092;
gi|145334905;
gi|186532758;
SRF-TF;
K-box;
Q9FPN7;

AT3G30720

QUA-QUINE STARCH (QQS)
Has 1 Blast hits to 1 proteins in 1 species: Archae - 0
Bacteria - 0
Metazoa - 0
Fungi - 0
Plants - 1
Viruses - 0
Other Eukaryotes - 0 (source: NCBI BLink).

qua-quine starch;
SUBAPPDB; gi|15230852;
Q3E7K4;

AT2G23700

Protein of unknown function, DUF547
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF547 (InterPro:IPR006869)
BEST Arabidopsis thaliana protein match is: Protein of unknown function, DUF547 (TAIR:AT5G66600.2)
Has 867 Blast hits to 688 proteins in 125 species: Archae - 4
Bacteria - 86
Metazoa - 75
Fungi - 16
Plants - 587
Viruses - 0
Other Eukaryotes - 99 (source: NCBI BLink).

Protein of unknown function;
4 - mitosisSUBAPPDB; gi|15224054;
DUF547;
O64832;

AT1G73660

protein tyrosine kinase family protein
CONTAINS InterPro DOMAIN/s: Protein kinase, ATP binding site (InterPro:IPR017441), Protein kinase, catalytic domain (InterPro:IPR000719), Serine-threonine/tyrosine-protein kinase (InterPro:IPR001245), Ubiquitin interacting motif (InterPro:IPR003903), Protein kinase-like domain (InterPro:IPR011009), Serine/threonine-protein kinase, active site (InterPro:IPR008271)
BEST Arabidopsis thaliana protein match is: Protein kinase superfamily protein (TAIR:AT1G18160.1)
Has 126827 Blast hits to 124278 proteins in 4857 species: Archae - 98
Bacteria - 13376
Metazoa - 48156
Fungi - 11388
Plants - 33654
Viruses - 503
Other Eukaryotes - 19652 (source: NCBI BLink).

protein tyrosine kinase family protein;
SUBAPPDB; gi|15219517;
Pkinase_Tyr;
Q9C9U5;

AT5G50350

unknown protein
FUNCTIONS IN: molecular_function unknown
INVOLVED IN: response to oxidative stress
LOCATED IN: chloroplast
EXPRESSED IN: 22 plant structures
EXPRESSED DURING: 13 growth stages
Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0
Bacteria - 0
Metazoa - 736
Fungi - 347
Plants - 385
Viruses - 0
Other Eukaryotes - 339 (source: NCBI BLink).

SUBAPPDB;Chloroplast (C)gi|15240659;
Q9FK37;

AT1G52670

Single hybrid motif superfamily protein
FUNCTIONS IN: binding
LOCATED IN: chloroplast
EXPRESSED IN: 22 plant structures
EXPRESSED DURING: 14 growth stages
CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089)
BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT3G15690.2)
Has 3136 Blast hits to 3136 proteins in 1282 species: Archae - 2
Bacteria - 2438
Metazoa - 2
Fungi - 0
Plants - 126
Viruses - 0
Other Eukaryotes - 568 (source: NCBI BLink).

Single hybrid motif superfamily protein;
53 - fatty acid biosynthesisSUBAPPDB; gi|18404133;
Biotin_lipoyl;
Q8VZ68;

AT1G52670

Single hybrid motif superfamily protein
FUNCTIONS IN: binding
LOCATED IN: chloroplast
EXPRESSED IN: 22 plant structures
EXPRESSED DURING: 14 growth stages
CONTAINS InterPro DOMAIN/s: Single hybrid motif (InterPro:IPR011053), Biotin/lipoyl attachment (InterPro:IPR000089)
BEST Arabidopsis thaliana protein match is: Single hybrid motif superfamily protein (TAIR:AT3G15690.2)
Has 3136 Blast hits to 3136 proteins in 1282 species: Archae - 2
Bacteria - 2438
Metazoa - 2
Fungi - 0
Plants - 126
Viruses - 0
Other Eukaryotes - 568 (source: NCBI BLink).

Single hybrid motif superfamily protein;
53 - fatty acid biosynthesisSUBAPPDB; gi|18404133;
Biotin_lipoyl;
Q8VZ68;

AT1G67230

LITTLE NUCLEI1 (LINC1)
FUNCTIONS IN: molecular_function unknown
INVOLVED IN: nucleus organization
LOCATED IN: cytosol, nucleus
EXPRESSED IN: 25 plant structures
EXPRESSED DURING: 13 growth stages
BEST Arabidopsis thaliana protein match is: nuclear matrix constituent protein-related (TAIR:AT1G13220.2)
Has 314297 Blast hits to 138342 proteins in 3965 species: Archae - 3454
Bacteria - 70538
Metazoa - 123746
Fungi - 25476
Plants - 17143
Viruses - 1173
Other Eukaryotes - 72767 (source: NCBI BLink).

little nuclei1;
SUBAPPDB; gi|15220369;
Q9FYH0;

AT5G03770

KDO transferase A (KDTA)
FUNCTIONS IN: transferase activity, transferring glycosyl groups
INVOLVED IN: biosynthetic process, carbohydrate metabolic process
LOCATED IN: mitochondrion
EXPRESSED IN: 8 plant structures
EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage
CONTAINS InterPro DOMAIN/s: Three-deoxy-D-manno-octulosonic-acid transferase, N-terminal (InterPro:IPR007507)
Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12
Bacteria - 1396
Metazoa - 17338
Fungi - 3422
Plants - 5037
Viruses - 0
Other Eukaryotes - 2996 (source: NCBI BLink).

KDO transferase A;
SUBAPPDB;Mitochondrion (M)gi|22326592;
Glycos_transf_N;
Q8VZA5;

AT1G08890

Major facilitator superfamily protein
FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity
INVOLVED IN: transport, transmembrane transport
LOCATED IN: chloroplast, membrane
CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196)
BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G08900.2)
Has 22268 Blast hits to 21798 proteins in 1696 species: Archae - 379
Bacteria - 7327
Metazoa - 4739
Fungi - 6227
Plants - 2471
Viruses - 0
Other Eukaryotes - 1125 (source: NCBI BLink).

Major facilitator superfamily protein;
SUBAPPDB; gi|42561831;
Sugar_tr;
Q9SCW7;

The protein location information is from plprot database

AT1G64360

unknown protein
Has 6 Blast hits to 6 proteins in 2 species: Archae - 0
Bacteria - 0
Metazoa - 0
Fungi - 0
Plants - 6
Viruses - 0
Other Eukaryotes - 0 (source: NCBI BLink).

SUBAPPDB; gi|18408032;
Q9C7W0;

AT5G05250

unknown protein
BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G56360.1)
Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12
Bacteria - 1396
Metazoa - 17338
Fungi - 3422
Plants - 5037
Viruses - 0
Other Eukaryotes - 2996 (source: NCBI BLink).

SUBAPPDB; gi|18414834;
Q9FLC9;

AT5G16150

plastidic GLC translocator (PGLCT)
FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity
INVOLVED IN: response to trehalose stimulus
LOCATED IN: membrane, chloroplast envelope
EXPRESSED IN: 24 plant structures
EXPRESSED DURING: 14 growth stages
CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196)
BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G05030.1)
Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12
Bacteria - 1396
Metazoa - 17338
Fungi - 3422
Plants - 5037
Viruses - 0
Other Eukaryotes - 2996 (source: NCBI BLink).
plastidic GLC translocator (PGLCT)
FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity
INVOLVED IN: response to trehalose stimulus
LOCATED IN: membrane, chloroplast envelope
EXPRESSED IN: 24 plant structures
EXPRESSED DURING: 14 growth stages
CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196)
BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G05030.1)
Has 53912 Blast hits to 52856 proteins in 2896 species: Archae - 987
Bacteria - 34173
Metazoa - 5457
Fungi - 8264
Plants - 2682
Viruses - 0
Other Eukaryotes - 2349 (source: NCBI BLink).
plastidic GLC translocator (PGLCT)
FUNCTIONS IN: carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity
INVOLVED IN: response to trehalose stimulus
LOCATED IN: membrane
EXPRESSED IN: 24 plant structures
EXPRESSED DURING: 14 growth stages
CONTAINS InterPro DOMAIN/s: Sugar transporter, conserved site (InterPro:IPR005829), Major facilitator superfamily (InterPro:IPR020846), General substrate transporter (InterPro:IPR005828), Sugar/inositol transporter (InterPro:IPR003663), Major facilitator superfamily, general substrate transporter (InterPro:IPR016196)
BEST Arabidopsis thaliana protein match is: Major facilitator superfamily protein (TAIR:AT1G05030.1)
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798
Bacteria - 22429
Metazoa - 974
Fungi - 991
Plants - 531
Viruses - 0
Other Eukaryotes - 9610 (source: NCBI BLink).

plastidic GLC translocator;
SUBAPPDB; gi|18417892;
gi|30685706;
gi|42573381;
Sugar_tr;
Q56ZZ7;

The protein location information is from ppdb database

AT1G76960

unknown protein
FUNCTIONS IN: molecular_function unknown
INVOLVED IN: biological_process unknown
LOCATED IN: endomembrane system
EXPRESSED IN: 9 plant structures
EXPRESSED DURING: 8 growth stages
Has 8 Blast hits to 8 proteins in 2 species: Archae - 0
Bacteria - 0
Metazoa - 0
Fungi - 0
Plants - 8
Viruses - 0
Other Eukaryotes - 0 (source: NCBI BLink).

25 - defense responseSUBAPPDB;Secretory Pathway (S)gi|18411302;
O49282;

AT2G04560

transferases, transferring glycosyl groups
FUNCTIONS IN: transferase activity, transferring glycosyl groups
INVOLVED IN: lipid A biosynthetic process
LOCATED IN: cellular_component unknown
EXPRESSED IN: 9 plant structures
EXPRESSED DURING: E expanded cotyledon stage, D bilateral stage
CONTAINS InterPro DOMAIN/s: Glycosyl transferase, family 19 (InterPro:IPR003835)
Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12
Bacteria - 1396
Metazoa - 17338
Fungi - 3422
Plants - 5037
Viruses - 0
Other Eukaryotes - 2996 (source: NCBI BLink).

transferases;
SUBAPPDB; gi|334184140;
LpxB;

AT5G46110

ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2 (APE2)
FUNCTIONS IN: antiporter activity
INVOLVED IN: transport
LOCATED IN: chloroplast, membrane, chloroplast envelope
EXPRESSED IN: 25 plant structures
EXPRESSED DURING: 13 growth stages
CONTAINS InterPro DOMAIN/s: Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696), Protein of unknown function DUF250 (InterPro:IPR004853)
BEST Arabidopsis thaliana protein match is: glucose 6-phosphate/phosphate translocator 1 (TAIR:AT5G54800.1)
Has 2548 Blast hits to 2546 proteins in 418 species: Archae - 2
Bacteria - 319
Metazoa - 501
Fungi - 418
Plants - 1031
Viruses - 0
Other Eukaryotes - 277 (source: NCBI BLink).
ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2 (APE2)
FUNCTIONS IN: antiporter activity
INVOLVED IN: transport
LOCATED IN: chloroplast, membrane, chloroplast envelope
EXPRESSED IN: 24 plant structures
EXPRESSED DURING: 13 growth stages
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853), Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696)
BEST Arabidopsis thaliana protein match is: glucose 6-phosphate/phosphate translocator 1 (TAIR:AT5G54800.1)
Has 2495 Blast hits to 2493 proteins in 411 species: Archae - 0
Bacteria - 311
Metazoa - 491
Fungi - 411
Plants - 1009
Viruses - 0
Other Eukaryotes - 273 (source: NCBI BLink).
ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2 (APE2)
FUNCTIONS IN: antiporter activity
INVOLVED IN: transport
LOCATED IN: chloroplast, membrane
EXPRESSED IN: 24 plant structures
EXPRESSED DURING: 13 growth stages
CONTAINS InterPro DOMAIN/s: Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696), Protein of unknown function DUF250 (InterPro:IPR004853)
BEST Arabidopsis thaliana protein match is: glucose 6-phosphate/phosphate translocator 1 (TAIR:AT5G54800.1)
Has 2191 Blast hits to 2189 proteins in 289 species: Archae - 0
Bacteria - 65
Metazoa - 435
Fungi - 400
Plants - 1036
Viruses - 0
Other Eukaryotes - 255 (source: NCBI BLink).
ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT 2 (APE2)
FUNCTIONS IN: antiporter activity
INVOLVED IN: transport
LOCATED IN: chloroplast, membrane
EXPRESSED IN: 24 plant structures
EXPRESSED DURING: 13 growth stages
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF250 (InterPro:IPR004853), Tpt phosphate/phosphoenolpyruvate translocator (InterPro:IPR004696)
BEST Arabidopsis thaliana protein match is: glucose 6-phosphate/phosphate translocator 1 (TAIR:AT5G54800.1)
Has 2560 Blast hits to 2558 proteins in 418 species: Archae - 2
Bacteria - 316
Metazoa - 499
Fungi - 419
Plants - 1040
Viruses - 0
Other Eukaryotes - 284 (source: NCBI BLink).

Glucose-6-phosphate/phosphate translocator-related;
2 - photosynthesisSUBAPPDB;Secretory Pathway (S)gi|30694881;
gi|30694885;
gi|79329946;
gi|145334749;
TPT;
Q9ZSR7;
Q2V313;
Q9FNL1;

The protein location information is from ppdb database

AT5G16730

LOCATED IN: chloroplast
EXPRESSED IN: 23 plant structures
EXPRESSED DURING: 13 growth stages
CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF827, plant (InterPro:IPR008545), Spectrin/alpha-actinin (InterPro:IPR018159)
BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF827) (TAIR:AT3G02930.1)
Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0
Bacteria - 0
Metazoa - 736
Fungi - 347
Plants - 385
Viruses - 0
Other Eukaryotes - 339 (source: NCBI BLink).

Plant protein of unknown function (DUF827);
SUBAPPDB;Chloroplast (C)gi|15237400;
DUF827;
Q9LFE4;

AT1G67840

chloroplast sensor kinase (CSK)
CONTAINS InterPro DOMAIN/s: ATPase-like, ATP-binding domain (InterPro:IPR003594)
Has 698 Blast hits to 698 proteins in 263 species: Archae - 2
Bacteria - 628
Metazoa - 0
Fungi - 1
Plants - 41
Viruses - 0
Other Eukaryotes - 26 (source: NCBI BLink).
chloroplast sensor kinase (CSK)
CONTAINS InterPro DOMAIN/s: Signal transduction histidine kinase, subgroup 1, dimerisation/phosphoacceptor domain (InterPro:IPR003661)
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798
Bacteria - 22429
Metazoa - 974
Fungi - 991
Plants - 531
Viruses - 0
Other Eukaryotes - 9610 (source: NCBI BLink).

chloroplast sensor kinase;
2 - photosynthesisSUBAPPDB;Chloroplast (C)gi|18408874;
gi|42572021;
HATPase_c;
Q3ECG5;

AT5G41140

Myosin heavy chain-related protein
BEST Arabidopsis thaliana protein match is: Myosin heavy chain-related protein (TAIR:AT1G63300.1)
Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0
Bacteria - 0
Metazoa - 736
Fungi - 347
Plants - 385
Viruses - 0
Other Eukaryotes - 339 (source: NCBI BLink).
Myosin heavy chain-related protein
FUNCTIONS IN: molecular_function unknown
INVOLVED IN: biological_process unknown
LOCATED IN: cellular_component unknown
EXPRESSED IN: 20 plant structures
EXPRESSED DURING: 13 growth stages
BEST Arabidopsis thaliana protein match is: Myosin heavy chain-related protein (TAIR:AT1G63300.1).

Myosin heavy chain-related protein;
SUBAPPDB; gi|15237570;
gi|334188107;
Q9FLL5;

AT2G19810

CCCH-type zinc finger family protein
CONTAINS InterPro DOMAIN/s: Zinc finger, CCCH-type (InterPro:IPR000571)
BEST Arabidopsis thaliana protein match is: Zinc finger C-x8-C-x5-C-x3-H type family protein (TAIR:AT4G29190.1)
Has 721 Blast hits to 690 proteins in 126 species: Archae - 0
Bacteria - 0
Metazoa - 152
Fungi - 6
Plants - 412
Viruses - 0
Other Eukaryotes - 151 (source: NCBI BLink).

CCCH-type zinc finger family protein;
470SUBAPPDB; gi|15224852;
O82199;