PMR Logo

Member Login   

Arabidopsis thaliana Species Overview

Experiment: At2010-KO 2 (Arabidopsis 2010 metabolomics -KO genes of unknown function Batch 2)

Sample Name ReplicatesDescription
aae17/86At5g23050/At1g55320
ELO 2/3 E26At3g06470/At4g36830
ELO 2/3/4 E26At3g06470/At4g36830/At1g75000
ELO 2/4 E26At3g06470/At1g75000
ELO 3/4 E26At4g36830/At1g75000
SALK_0085056At5g47720
SALK_0086566At1g76130
SALK_011304C6At1g12880
SALK_021108_E26At1g52670
SALK_021108_E2_IH6At1g52670_1H
SALK_022971C6At2g39670
SALK_024747C6At4g22890
SALK_064795C6At5g53580
SALK_0729826At1g34350
SALK_0746976At5g19070
SALK_0751856At4g36830
SALK_0830296At1g75000
SALK_083600C6At5g61790
SALK_090101C6At5g08120
SALK_097354C6At1g58030
SALK_105337C6At1g71697
SALK_1094056At3g06470
SALK_126891C6At4g08350
SALK_1373176At5g01300
SALK_137479C6At1g17160
SALK_151779C6At3g52750
Wild type (E2)-16-
Wild type (E2)-26-
Wild type_E2_IH6-

8 Platforms

Platform: Fatty Acids [Nikolau lab]

+ Extraction metadata
+ GC/MS metadata
+ Platform description

Platform: Phytosterols [Lange lab]

+ Platform description

Platform: Isoprenoids [Lange lab]

+ Platform description

Platform: Lipidomics [Welti lab]

+ Platform description

Platform: Non-targeted GC-TOF [Fiehn lab]

Platform: Non-targeted UPLC-Q-TOF [Sumner lab]

+ Platform description

Platform: Cuticle Wax [Nikolau lab]

+ Platform description

Platform: Ultra Performance Liquid Chromatography [Shulaev lab]

+ Platform description



+ Biological metadata
Metabolite Search

<<

Chemically defined metabolites in this experiment:

1,8,9-Anthracenetriol
1-hexadecanol
1-Hydroxybenzotriazole
1-Methyl-histidine
1-monoolein
1-monostearin
1-Tetradecanol
16-Hydroxyhexadecanoic acid
18-hydroxyoctadec-9-enoic acid
18-hydroxyoctadeca-9,12-dienoic acid
18-hydroxyoctadecanoic acid
2'-deoxyguanosine
2,4,6,Trihydroxyacetophenone
2,4,Dihydroxyacetophenone
2,5,Dihydroxyacetophenone
2,6,Dihydroxyacetphenone
2-aminoadipic acid
2-deoxyerythritol NIST
2-hydroxydocosanoic acid
2-hydroxyeicosanoic acid
2-Hydroxyflavone
2-hydroxyglutaric acid
2-hydroxyhexacosanoic acid
2-hydroxyhexadecanoic acid
2-hydroxytetracos-2-enoic acid
2-hydroxytetracosanoic acid
2-hydroxytetradecanoic acid
2-ketoglucose dimethylacetal NIST
2-monoolein
2-monopalmitin
2-OH-5,7-dimethoxy-isoflavone
20-hydroxyeicosanoic acid
22-hydroxydocosanoic acid
3',4',7,8-tetrahydroxyflavone
3',4'-methoxy-7-hydroxy-flavone
3',4'-O-methoxyflavone
3',7-hydoroxy-flavone
3,3',4'-methoxy-phenylo-7-OH-Coumarin
3,3,3,4-Tetrahydroxyflavone
3,4-dihydroxy aurone
3,4DiHydroxyBenzoicAcid
3,5 dihydroxybenzoic acid
3,5,Dimethoxy4Hydroxyacetophenone
3,5-dimethoxy-4-hydroxy oxycinnamic acid
3,6,2,3-tetrahydroxyflavone
3,6,2,4-tetrahydroxyflavone
3,7,3,4,5-pentahydroxyflavone
3-aminoisobutyric acid
3-Benzoyloy-ethyl-glucosinolate
3-Butenyl-glucosinolate
3-Glc-28-Ara-Rha-Xyl Medicagenic Acid
3-Glc-Glc-28-Ara-Rha-Xyl Medicagenic Acid
3-Glc-MedicagenicAcid
3-GlcA-28-Ara-Rha-Xyl Medicagenic Acid
3-GlcA-28-Ara-Rha-Xyl-Medicagenic Acid
3-Hydroxy-4-methoxycinnamic acid
3-hydroxyhexadecanoic acid
3-hydroxypropionic acid
3-Hydroy-n-propyl-glucosinolate
3-Hydroypropyl glucosinolate
3-Methyl-histidine
3-Methylthio-n-propyl-glucosinolate
3-ureidopropionate
4',6-dihydroxy aurone
4,5-dihydroxy-7-methoxy isoflavone
4,6,OH-aurone
4,6-dimethoxyisoflavone-7-O-beta-D-glucoparanoside
4,7-dimethoxy apigenin
4-Benzoyloy-n-butyl-glucosinolate
4-hydroxybutyric acid
4-Hydroxyflavone
4-hydroxyphenyl-2-ethylglucopyranoside NIST
4-Hydroy-n-butyl-glucosinolate
4-Methylpentyl-glucosinolate
4-Methylsulfinyl-n-butyl-glucosinolate
4-Methylthio-n-butyl-glucosinolate
4MethylUmbelliferone
4MethylUmbelliferone - Dimer
5'-deoxy-5'-methylthioadenosine
5,4-dimethoxyflavone
5,6,7-OH flavone
5,6,7-trihydroxy-flavone
5,7,3,4,5-penthahydroxyflavone
5,7,4-trimethoxy aurone
5,7-dihydroxy4'-methoxy-flavone
5,7-dimethoxy-apigenin
5-hydroxy-flavone
5-Hydroxyflavone - Dimer
5-hydroxynorvaline NIST
5-Methoxysalicylic acid (Aut_DH)
5-methoxytryptamine
5-Methylsulfinyl-n-pentyl-glucosinolate
5-Methylthio-n-pentyl-glucosinolate
6'Benzoyl-4-methyl-sulfinyl-butyl-glucosinolate
6,7,4-Trihydroxyflavone
6-Hydroxyflavone
6-Hydroxyflavone - Dimer
6-methoxyluteolin
6-Methylsulfinyl-n-heyl-glucosinolate
6-Methylthio-n-heyl-glucosinolate
7,3,4,5-tetrahydroxyflavone
7,4-dimethoxy-3hydroxyflavone
7,4-OH-flavone
7-methoxy apigenin
7-Methylsulfinyl-n-heptyl-glucosinolate
7-Methylthio-n-heptyl-glucosinolate
7Hydroxyflavone
7Hydroxyflavone - Dimer
8-Methylsulfinyl-n-octyl glucosinolate
8-Methylthio-n-octyl-glucosinolate
acetophenone NIST
adenine
adenosine
adipic acid
agmatine
alanine
allantoic acid -H2O
allantoin 5TMS
alpha Carotene
alpha ketoglutaric acid
alpha-Cyano-3-hydroxycinnamicacid (fragment)
aminomalonic acid
Apigenin
Apigenin-7-O-glu
Ara-GlcA-Soyasapogenol B
arabinose
arabitol
ascorbic acid
asparagine
aspartic acid
benzoic acid
Benzylglucosinolate_C14H18O9NCH3_4Canada
beta Carotene
beta-alanine
beta-gentiobiose
beta-sitosterol
Biochanin
butyrolactam NIST
Caffeic acid
campesterol
capric acid
Catechin
cellobiose
cellobiotol
Cellotrise
Cellotrise - Dimer
cerotic acid
ChlorogenicAcid
Chlorophyll a
Chlorophyll b
cholesterol
Chrysoecin
cis-sinapinic acid
citric acid
citrulline
conduritol-beta-epoxide
coniferin NIST
Creatinine
Cyanidin-3-O-Glucoside
Cyanindin-3-glucoside
Cycloartenol
cysteine
cysteine-glycine
cytidine
cytosin
D,L-beta-Aminoisobutyric acid
Daidzein
Daidzin
dehydroabietic acid
dehydroascorbate
delta-Hydroxylysine
digalacturonic acid
dihydroabietic acid
Dihydroxy Quercetin
dihydroxymalonic acid NIST
Diosmetin
Diosmin
Docos-13-enoic acid
Docosan-1-ol
docosanoic acid
Dodec-9-enoic acid
dodecane
Eicos-11-enoic acid
elaidic acid
enolpyruvate NIST
Epicatechin
Epicatechin-glucoside
Eriodictyol
erythritol
erythronic acid
erythronic acid lactone
Esculetin
Esculin
ethanolamine
Eucomol
Faureral
ferulic acid
Formononetin-7-O-Glucoside
fructose
fructose-6-phosphate
fucose 1 + rhamnose 2
fumaric acid
GABA
galactinol
galactonic acid
galactose
galactose-6-phosphate
gamma-Amino-n-butyric acid
Gardenin A
Genisitin
genistein
Genistin
genistoside
gentisic acid
gentisic acid (fragment)
Glc-Gal-GlcA-Soyasapogenol B
glucoheptulose
gluconic acid
gluconic acid lactone
glucose
glucose-1-phosphate
glucose-6-phosphate
glucuronic acid
glutamic acid
glutamine
glyceric acid
glycerol
glycerol-3-galactoside
glycerol-alpha-phosphate
glycine
Glycitein
glycolic acid
glycyl proline
guanine
guanosine
Hederagenin
heneicosane
heptacosane
heptadecanoic acid
Hesperidin
hexacosanoic acid
Hexadec-9-enoic acid
Hexadeca-7,10,13-trienoic acid
Hexadecan-1-ol
hexadecanoic acid
histidine
homo-eriodictyol
homocysteine
homoglutamine
homoserine
HydroCinnamicAcid
Hydroxy-L-Proline
hydroxycarbamate NIST
hydroxylamine
Icosan-1-ol
icosanoic acid
idonic acid NIST
Indol-3-ylmethyl-glucosinolate
inositol allo-
inositol myo-
inositol-4-monophosphate
inulobiose
iso-Heptyl glucosinolate from Armoracia lapathifolia
iso-Hexylglucosinolate from Armoracia lapathifolia
Isofucosterol
isoleucine
Isoliquiritigenin
isonicotinic acid
Isorhoifolin
isothreonic acid
Isovanillin
Kaempferide
Kaempferol
Kaempferol-3-O-glucoside
Kaempferol-7-neohesperidoside
kaempferol-7-O-glucoside
Kempferol-3-O-rutinoside
Ketol, C29 alpha-ketol, 15-OH-14-one, 14-OH-15-one
Ketone C29, 15-
Ketone C29, 2-
Ketone C33, 2-
L-Alanine
L-alpha-Amino adipic acid
L-alpha-Amino-n-butyric acid
L-Arginine
L-Asparagine
L-Aspartic acid
L-Carnosine
L-Citrulline
L-Cystathionine
L-Cysteine
L-Cystine
L-Glutamic acid
L-Glutamine
L-Histidine
L-Homocystine
L-isoleucine
L-Leucine
L-Lysine
L-Methionine
L-Ornithine
L-Phenylalanine
L-Proline
L-Sarcosine
L-Serine
L-Threonine
L-Tryptophan
L-Tyrosine
L-Valine
lactic acid
lactobionic acid
lauric acid
leucine
levoglucosan
lignoceric acid
linoleic acid
linolenic acid
Liquiritigenin
Liquiritin
lucenin B
Lutein
Luteolin
Luteolin 7-O-glucoside
Luteolin-3'- 7-O-glucoside
Luteolin-3,7-O-glu
luteolin-3-7-di-O-glu
Luteolin-4-O-glu
Luteolin-5'- 7-O-glucoside
luteolin4'- 7-O-glucoside
lysine
m-coumaric acid
maleic acid
maleimide
malic acid
malonic acid
maltose
maltotriose
mannonic acid NIST
mannose
Medicarpin
melibiose
methanolphosphate
methionine
methionine sulfoxide
Methoyindol3-ylmethyl glucosinolate
monopalmitin-1-glyceride
mucic acid
Myricetin
myristic acid
N-acetyl-D-hexosamine
N-acetyl-D-mannosamine
N-acetylornithine
N-methylalanine
Narigenin-7-O-glucoside
Narigenin-7-O-glucoside - aglycone
Naringenin
Naringenin 4'-O-glucoside
Naringin
NeoDiosmin
Neohesperidin
nicotianamine
nicotinamide
O-acetylserine
o-Coumaric acid-B-glucoside
o-CoumaricAcid
Octadec-9-enoic acid
Octadeca-9,12,15-trienoic acid
Octadeca-9,12-dienoic acid
Octadecan-1-ol
Octadecanoic acid
octadecanol
Oleanolic acid
oleic acid
Orionin
ornithine
oxalic acid
oxoproline
p-Coumaric acid
palatinitol
palatinose
palmitic acid
parabanic acid NIST
pelargonic acid
Pelargonidin-3-O-glucoside
Pentadecanoic acid
Phenyl-Ethyl-glucosinolate-Chromadex
phenylalanine
Pheophytin A
phosphoethanolamine
phosphoric acid
phytol
proline
propane-1,3-diol NIST
pseudo uridine
Puerarin
putrescine
pyrazine 2,5-dihydroxy NIST
pyrophosphate
pyruvic acid
Quercetin same as Quercetin RT 8.64
Quercetin (This cmpd see loss of 2 from ESI)
Quercetin (This cmpd see loss of 2 from ESI) same as Quercetin RT 8.64
Quercitrin
raffinose
Resveratrol
Rha-Ara-GlcA-Soyasapogenol B
Rha-Gal-GlcA-Soyasapogenol B (Soy1)
ribitol
ribonic acid
ribose
ribose-5-phosphate
Rutin
saccharic acid
salicylaldehyde
Saponarin
Scopoletin
scopoletin (dimer)
Scutellarein (flavone)
Scutellarein-&-0-glucuronide
serine
shikimic acid
Sinigrin-glucosinolate
Sissotrin
sissotrin (biochinin-7-glu)
Sissotrin aglycone (Biochanin-7-glc (ion for aglycone)
sitosterol
sophorose
sorbitol
spermidine
stearic acid
Sterol, 4-methylcholesta-8,24-dien-3-ol
Sterol, campesterol
Sterol, cholesterol
Sterol, delta-7-avenasterol
Sterol, sitosterol
Sterol, squalene
Sterol, Stigmast-4-en-3-one
Sterol, stigmasterol
Stigmastan-3,5-diene
Stigmastan-5,7-diene
stigmastanol
stigmasterol
Stigmasterol **
suberyl glycine
succinic acid
sucrose
sulfuric acid
Taurine
Taxifolin
Tectochrysin
Tetracos-15-enoic acid
Tetracosan-1ol
Tetracosane
Tetracosnoic acid
tetradecanoic acid
threitol
threonic acid
threonine
thymine
Tiliroside
tocopherol alpha
tocopherol gamma-
Total_FA
trans-Cinnamic acid
trans-sinapinic acid
trehalose
Tricos-22-enoic acid
Tricosanoic acid
Tridecan-1-ol
tryptophane
tyramine
tyrosine
umbelliferone (used as IS )
Uncosan-1-ol
uracil
urea
uridine
valine
Vitamin E
Vitaxin (apigenin-7-O-glucoside)
xylitol
xylonic acid
xylonolactone NIST
xylose
xylulose NIST

Volcano Plot?

Sample 1:

Sample 2:


Morphological analysis?

Sample 1:

Sample 2: