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Catharanthus roseus Species Overview

Experiment: MedPlntConsort (Medicinal Plant Consortium - metabolomic and transcriptomic data from selected plant materials)

Co-analysis of metabolomics and transcriptomics data is available. To identify the transcripts whose levels are most closely correlated with a metabolite, click on that metabolite. In the window that opens, click on [Go to omics analysis]

Sample Name ReplicatesDescription
Entire root, None1
Flower, Buds, Immature (25-75% expanded), mature (fully expanded)1
Hairy root RebH_F3
Hairy root TDCi3
Leaf, Immature (25-75%)2
Leaf, Mature (fully expanded)1
Stem, primary1
Sterile seedling, 14 days5
Sterile seedling, 7 days1
Sterile seedling, Methyl jasmonate, 6 microM for 12 days4
Sterile seedling, Methyl jasmonate, 6 microM for 5 days2
Suspension culture, Methyl jasmonate, 100 microM for 0 hours3
Suspension culture, Methyl jasmonate, 100 microM for 12 hours3
Suspension culture, Methyl jasmonate, 100 microM for 24 hours3
Suspension culture, Methyl jasmonate, 100 microM for 6 hours3
Suspension culture, Yeast extract, 0 mg/mL for 24 hours3
Suspension culture, Yeast extract, 0.3 mg/mL for 12 hours3
Suspension culture, Yeast extract, 0.3 mg/mL for 24 hours3
Suspension culture, Yeast extract, 0.3 mg/mL for 6 hours3

1 Platforms

Platform: Catharanthus roseus-LC/TOF MS Positive Ion




+ Biological metadata
Metabolite Search

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Chemically defined metabolites in this experiment:

11-Hydroxytabersonine
        MDC-Cat-HPLC-E-POS-F1-353.175-8.19  [M+H]+
14,15-Didehydro-epivincadine
        MDC-Cat-HPLC-E-POS-F1-339.198-7.6  [M+H]+
Ajmalicine
        MDC-Cat-HPLC-E-POS-F1-353.173-7.01  [M+H]+
Akuammicine
        MDC-Cat-HPLC-E-POS-F1-323.166-6.94  [M+H]+
Apparicine
        MDC-Cat-HPLC-E-POS-F1-265.16-6.5  [M+H]+
beta-Carboline
        MDC-Cat-HPLC-E-POS-F1-169.071-1.95  [M+H]+
Catharanthine
        MDC-Cat-HPLC-E-POS-F1-337.18-7.15  [M+H]+
Deacetoxyvindoline
        MDC-Cat-HPLC-E-POS-F1-399.215-9.23  [M+H]+
Dehydrovinblastine
        MDC-Cat-HPLC-E-POS-F1-809.38-9.51  [M+H]+
Loganic acid
        MDC-Cat-HPLC-E-POS-F1-377.13-1.75  [M+H]+
Loganic acid
        MDC-Cat-HPLC-E-POS-F1-394.159-1.75  [M+NH4]+
Loganic acid
        MDC-Cat-HPLC-E-POS-F1-399.112-1.76  [M+Na]+
Loganic acid
        MDC-Cat-HPLC-E-POS-F1-415.086-1.73  [M+K]+
Loganin
        MDC-Cat-HPLC-E-POS-F1-408.174-3.71  [M+NH4]+
Loganin
        MDC-Cat-HPLC-E-POS-F1-413.127-3.73  [M+Na]+
O-deacetyl vindolidine
        MDC-Cat-HPLC-E-POS-F1-385.202-7.3  [M+H]+
Perivine
        MDC-Cat-HPLC-E-POS-F1-339.161-5.51  [M+H]+
Secologanin
        MDC-Cat-HPLC-E-POS-F1-389.133-4.71  [M+H]+
Secologanin
        MDC-Cat-HPLC-E-POS-F1-411.115-4.88  [M+Na]+
Secologanin
        MDC-Cat-HPLC-E-POS-F1-427.085-4.7  [M+K]+
Serpentine
        MDC-Cat-HPLC-E-POS-F1-349.144-7.75  [M+H]+
Strictosidine
        MDC-Cat-HPLC-E-POS-F1-531.219-6.97  [M+H]+
sucrose
        MDC-Cat-HPLC-E-POS-F1-381.069-0.46  [M+K]+
Tabersonine
        MDC-Cat-HPLC-E-POS-F1-337.181-8.38  [M+H]+
Tabersonine or catharanthine isomer
        MDC-Cat-HPLC-E-POS-F1-337.179-5.02  [M+H]+
Tryptamine
        MDC-Cat-HPLC-E-POS-F1-161.103-1.03  [M+H]+
Vinblastine
        MDC-Cat-HPLC-E-POS-F1-811.393-9.59  [M+H]+
Vincamine
        MDC-Cat-HPLC-E-POS-F1-355.194-7.84  [M+H]+
Vindolidine
        MDC-Cat-HPLC-E-POS-F1-427.209-9.12  [M+H]+
Vindoline
        MDC-Cat-HPLC-E-POS-F1-457.213-8.91  [M+H]+

Volcano Plot?

Sample 1:

Sample 2: