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Arabidopsis thaliana Species Overview

Experiment: At2010-KO 9 (Arabidopsis 2010 metabolomics -KO genes of unknown function Batch 9)

Sample Name ReplicatesDescription
Wild type (E9)-16-
SALK_023383C6At1g67230
SALK_0359816At5g03770
SALK_0388886At1g08890
SALK_052233C6At1g64360
SALK_071767C6At5g05250
SALK_078684C6At5g16150
SALK_0857756At1g76960
SALK_0875376At2g04560
SALK_093334C6At5g46110
SALK_097378C6At5g16730
Wild type (E9)-26-
SALK_1254116At1g67840
SALK_133966C6At5g41140
SALK_151571C6At2g19810
SALK_021108_E96At1g52670
Wild type_E9_IH6-
SALK_021108_IH6At1g52670_1H
CS8244686At5g17520
CS8559026At4g05210
maf26At5g65050
QQSRNAi T2-26At3g30720
SALK_0037776At2g23700
SALK_0045416At1g73660
SALK_0046566At5g50350

7 Platforms

Platform: Fatty Acids [Nikolau lab]

+ Extraction metadata
+ GC/MS metadata
+ Platform description

Platform: Cuticle Wax Extraction [Nikolau lab]

+ Platform description

Platform: Phytosterols [Lange lab]

+ Platform description

Platform: Isoprenoids [Lange lab]

+ Platform description

Platform: Lipidomics [Welti lab]

+ Platform description

Platform: Non-targeted GC-TOF [Fiehn lab]

Platform: Non-targeted UPLC-Q-TOF [Sumner lab]

+ Platform description



+ Biological metadata
Metabolite Search

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Chemically defined metabolites in this experiment:

1,5-anhydroglucitol
1,8,9-Anthracenetriol
1-Docosanol
1-Dotriacontanol
1-Hexacosanol
1-Hydroxybenzotriazole
1-Icosanol
1-monostearin
1-Octacosanol
1-Octadecanol
1-Tetracosanol
1-Tetratriacontanol
1-Triacontanol
13-Pentacosanol
14-Heptacosanol
15-Nonacosanone
16-Hentriacontanol
16-Hydroxyhexadecanoic acid
18-hydroxyoctadec-9-enoic acid
2,4,6,Trihydroxyacetophenone
2,4,Dihydroxyacetophenone
2,5,Dihydroxyacetophenone
2,6,Dihydroxyacetphenone
2-aminoadipic acid
2-hydroxyeicosanoic acid
2-Hydroxyflavone
2-hydroxyglutaric acid
2-isopropylmalic acid
2-ketoglucose dimethylacetal NIST
2-OH-5,7-dimethoxy-isoflavone
3',4',7,8-tetrahydroxyflavone
3',4'-methoxy-7-hydroxy-flavone
3',4'-O-methoxyflavone
3',7-hydoroxy-flavone
3,3',4'-methoxy-phenylo-7-OH-Coumarin
3,3,3,4-Tetrahydroxyflavone
3,4-dihydroxy aurone
3,5 dihydroxybenzoic acid
3,5,Dimethoxy4Hydroxyacetophenone
3,5-dimethoxy-4-hydroxy oxycinnamic acid
3,6,2,3-tetrahydroxyflavone
3,7,3,4,5-pentahydroxyflavone
3-aminoisobutyric acid
3-Benzoyloy-ethyl-glucosinolate
3-Butenyl-glucosinolate
3-Glc-28-Ara-Rha-Xyl Medicagenic Acid
3-Glc-Glc-28-Ara-Rha-Xyl Medicagenic Acid
3-Glc-MedicagenicAcid
3-GlcA-28-Ara-Rha-Xyl Medicagenic Acid
3-GlcA-28-Ara-Rha-Xyl-Medicagenic Acid
3-Hydroxy-4-methoxycinnamic acid
3-hydroxypropionic acid
3-Hydroy-n-propyl-glucosinolate
3-Hydroypropyl glucosinolate
3-Methylthio-n-propyl-glucosinolate
3-Phosphoglycerate
4',6-dihydroxy aurone
4,5-dihydroxy-7-methoxy isoflavone
4,6,OH-aurone
4,6-dimethoxyisoflavone-7-O-beta-D-glucoparanoside
4,7-dimethoxy apigenin
4-Benzoyloy-n-butyl-glucosinolate
4-Hydroxyflavone
4-Hydroxyproline
4-Hydroy-n-butyl-glucosinolate
4-Methylcholesta-8,24-dien-3-ol
4-Methylpentyl-glucosinolate
4-Methylsulfinyl-n-butyl-glucosinolate
4-Methylthio-n-butyl-glucosinolate
4MethylUmbelliferone
4MethylUmbelliferone - Dimer
5'-deoxy-5'-methylthioadenosine
5,4-dimethoxyflavone
5,6,7-OH flavone
5,6,7-trihydroxy-flavone
5,7,3,4,5-penthahydroxyflavone
5,7,4-trimethoxy aurone
5,7-dihydroxy4'-methoxy-flavone
5,7-dimethoxy-apigenin
5-hydroxy-flavone
5-Hydroxyflavone - Dimer
5-hydroxymethyl-2-furoic acid NIST
5-hydroxynorvaline NIST
5-Methoxysalicylic acid (Aut_DH)
5-Methylsulfinyl-n-pentyl-glucosinolate
5-Methylthio-n-pentyl-glucosinolate
6'Benzoyl-4-methyl-sulfinyl-butyl-glucosinolate
6,7,4-Trihydroxyflavone
6-Hydroxyflavone
6-Hydroxyflavone - Dimer
6-methoxyluteolin
6-Methylsulfinyl-n-heyl-glucosinolate
6-Methylthio-n-heyl-glucosinolate
7,3,4,5-tetrahydroxyflavone
7,4-dimethoxy-3hydroxyflavone
7,4-OH-flavone
7-methoxy apigenin
7-Methylsulfinyl-n-heptyl-glucosinolate
7-Methylthio-n-heptyl-glucosinolate
7Hydroxyflavone
7Hydroxyflavone - Dimer
8-Methylsulfinyl-n-octyl glucosinolate
8-Methylthio-n-octyl-glucosinolate
acetophenone NIST
adenine
adenosine
adenosine-5-phosphate
agmatine
alanine
Allantoic acid
Allantoin
alpha Carotene
alpha ketoglutaric acid
alpha-Cyano-3-hydroxycinnamicacid (fragment)
alpha-tocopherol
Apigenin
Apigenin-7-O-glu
Ara-GlcA-Soyasapogenol B (Aut )
arabinose
arabitol
arginine + ornithine
ascorbic acid
asparagine
aspartic acid
benzoic acid
Benzylglucosinolate_C14H18O9NCH3_4Canada
beta-alanine
beta-gentiobiose
beta-glycerolphosphate
beta-sitosterol
Biochanin
BML-PS2-12.383-456.4 Betulin
brassicasteryl
brassicasteryl ester(18:3)
brassicasteryl glucoside
butyrolactam NIST
Caffeic acid
campesterol
campesteryl
campesteryl ester(18:3)
campesteryl glucoside
capric acid
Catechin
cellobiose
cellobiotol
Cellotrise
Cellotrise - Dimer
cerotic acid
ChlorogenicAcid
Chlorophyll a
Chlorophyll b
cholesterol
cholesteryl
cholesteryl ester(18:3)
cholesteryl glucoside
Chrysoecin
cis-sinapinic acid
citric acid
citrulline
conduritol-beta-epoxide
coniferin NIST
Coniferyl alcohol
Cyanidin-3-O-Glucoside
Cyanindin-3-glucoside
cyano-L-alanine
Cycloartenol
cysteine
cysteine-glycine
cytidine-5-monophosphate NIST
Daidzein
Daidzin
dehydroascorbate
digalacturonic acid
Dihydroxy Quercetin
dihydroxymalonic acid NIST
Diosmetin
Diosmin
Docosan-1-ol
docosanoic acid
Dodec-9-enoic acid
dodecane
Dotriacontanal
Dotriacontanoic acid
enolpyruvate NIST
Epicatechin
Epicatechin-glucoside
Eriodictyol
erythritol
erythronic acid
erythronic acid lactone
Esculetin
Esculin
ethanolamine
Eucomol
Faureral
ferulic acid
Formononetin-7-O-Glucoside
fructose
fructose-1-phosphate
fructose-6-phosphate
fumaric acid
GABA
galactinol
galactonic acid
galactose-6-phosphate
gamma-tocopherol
Gardenin A
Genisitin
genistein
Genistin
genistoside
gentisic acid
gentisic acid (fragment)
Glc-Gal-GlcA-Soyasapogenol B
glucoheptulose
gluconic acid
gluconic acid lactone
glucose
glucose-1-phosphate
glucose-6-phosphate
glucuronic acid
glutamic acid
glutamine
glyceric acid
glycero-guloheptose NIST
glycerol
glycerol-3-galactoside
glycerol-alpha-phosphate
glycerol-beta-phosphate
glycine
Glycitein
glycolic acid
guanine
guanosine
Hederagenin
heptadecanoic acid
Hesperidin
hexacosanoic acid
Hexadec-9-enoic acid
Hexadeca-7,10,13-trienoic acid
Hexadeca-7,10-dienoic acid
hexadecanedioate
hexadecanoic acid
histidine
homo-eriodictyol
homocystine
homoglutamine
homoserine
HydroCinnamicAcid
hydroxylamine
Icosan-1-ol
icosanoic acid
idonic acid NIST
Indol-3-ylmethyl-glucosinolate
Indole-3-acetonitrile
inositol allo-
inositol myo-
inositol-4-monophosphate
inulobiose
iso-Heptyl glucosinolate from Armoracia lapathifolia
iso-Hexylglucosinolate from Armoracia lapathifolia
Isofucosterol
isoleucine
Isoliquiritigenin
isonicotinic acid
Isorhoifolin
Isovanillin
Kaempferide
Kaempferol
Kaempferol-3-O-glucoside (Put)
Kaempferol-7-neohesperidoside
kaempferol-7-O-glucoside
Kempferol-3-O-rutinoside
lactic acid
lauric acid
leucine
leucrose
levanbiose
levoglucosan
linoleic acid
linolenic acid
Liquiritigenin
Liquiritin
lucenin B
Lutein
Luteolin
Luteolin 7-O-glucoside
Luteolin-2
Luteolin-3'- 7-O-glucoside
Luteolin-3,7-O-glu
luteolin-3-7-di-O-glu
Luteolin-4-O-glu
Luteolin-5'- 7-O-glucoside
luteolin4'- 7-O-glucoside
lysine
lyxose
m-coumaric acid
maleic acid
maleimide
malic acid
malonic acid
maltose
maltotriose
mannonic acid NIST
mannose-6-phosphate NIST
Medicarpin
Melezitose
methanolphosphate
methionine
methionine sulfoxide
Methoyindol3-ylmethyl glucosinolate
Methyl 4,8,12-trimethyltridecanoate
monopalmitin-1-glyceride
mucic acid
Myricetin
myristic acid
N-acetyl-D-hexosamine
N-acetyl-D-mannosamine
N-acetylornithine
n-epsilon-trimethyllysine
n-Hentriacontane
n-Heptacosane
N-methylalanine
n-Nonacosane
n-Pentacosane
n-Pentatriacontane
n-Tritriacontane
Narigenin-7-O-glucoside
Narigenin-7-O-glucoside - aglycone
Naringenin
Naringenin 4'-O-glucoside
Naringenin-2
Naringin
NeoDiosmin
Neohesperidin
nicotianamine
nicotinamide
Nicotinic acid
Nonacosan, 15-OH-14-one, 14-OH-15-one
O-acetylserine
o-Coumaric acid-B-glucoside
o-CoumaricAcid
Octacosanal
Octacosanoic acid
Octadeca-9,12,15-trienoic acid
Octadeca-9,12-dienoic acid
Octadecanoic acid
Oleanolic acid
oleic acid
Orionin
ornithine
oxalic acid
oxoproline
p-Coumaric acid
palatinitol
palatinose
palmitic acid
parabanic acid NIST
pelargonic acid
Pelargonidin-3-O-glucoside
Pentacosanoic acid
Pentadecanoic acid
Phenyl-Ethyl-glucosinolate-Chromadex
phenylalanine
Pheophytin A
phosphoethanolamine
phosphoric acid
phytol
pipecolic acid
proline
propane-1,3-diol NIST
Puerarin
putrescine
pyrazine 2,5-dihydroxy NIST
pyrophosphate
Pyrrole-2-carboxylic acid
pyruvic acid
Quercetin same as Quercetin RT 8.64
Quercetin (This cmpd see loss of 2 from ESI)
Quercetin (This cmpd see loss of 2 from ESI) same as Quercetin RT 8.64
Quercitrin
raffinose
Resveratrol
Rha-Ara-GlcA-Soyasapogenol B
Rha-Gal-GlcA-Soyasapogenol B (Soy1)
ribitol
ribonic acid
ribose
Rutin
Saponarin
Scopoletin
scopoletin (dimer)
Scutellarein (flavone)
Scutellarein-&-0-glucuronide
serine
shikimic acid
Sinigrin-glucosinolate
Sissotrin
sissotrin (biochinin-7-glu)
Sissotrin aglycone (Biochanin-7-glc (ion for aglycone)
sitosterol
sitosteryl
sitosteryl ester (18:3)
sitosteryl glucoside
sophorose
spermidine
stearic acid
stigmasterol
stigmasteryl
stigmasteryl ester (18:3)
stigmasteryl glucoside
suberyl glycine
succinic acid
sucrose
tagatose
Taxifolin
Tectochrysin
tetracosanoic acid
Tetracosnoic acid
tetradecan-1-ol
Tetradecanal
tetradecanoic acid
Tetratriacontanal
threitol
threonic acid
threonine
threose
Tiliroside
tocopherol alpha
Total GIPCer +NL615
Total HexCer +NL162
Total LPC
Total LPE
Total LPG
Total Polar Glycerolipids
Total SQDG -prec 225
Total Steryl Glucosides NL 197
Total_FA
trans-4-hydroxyproline
trans-Cinnamic acid
trans-sinapinic acid
trehalose
Triacontanal
Triacontanoic acid
Tricos-22-enoic acid
Tricosanoic acid
Tridecan-1-ol
tryptamine NIST
tryptophane
tyramine
tyrosine
UDP Glcc
umbelliferone (used as IS )
urea
uridine
valine
Vitaxin (apigenin-7-O-glucoside)
xylitol
xylonic acid
xylonolactone NIST
xylose
xylulose NIST
zymosterol

Volcano Plot?

Sample 1:

Sample 2:


Morphological analysis?

Sample 1:

Sample 2: