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Arabidopsis thaliana Species Overview

Experiment: Methylation-KO RIKEN (Comparison of Arabidopsis methylation gene knockout (MeKO) mutants)

Sample Name ReplicatesDescription
Wild type (JP-MeKO)_05_10-13-
Wild type (JP-MeKO)_01_09-16-
Wild type (JP-MeKO)_02_03_04-16-
Wild type (JP-MeKO)_06_07-16-
Wild type (JP-MeKO)_08_11_12-16-
aba1-5-MeKO_01_096AT5G67030-MeKO_01_09
aba2-3-MeKO_01_098AT1G52340-MeKO_01_09
rsw2-1-MeKO_01_098AT5G49720-MeKO_01_09
cim6-MeKO_01_098CIM6-MeKO_01_09
Wild type (JP-MeKO)_01_09-215-
cim9-MeKO_02_03_048CIM9-MeKO_02_03_04
cim13-MeKO_02_03_048CIM13-MeKO_02_03_04
cim11-MeKO_02_03_048CIM11-MeKO_02_03_04
mur9-1-MeKO_02_03_048MUR9-MeKO_02_03_04
Wild type (JP-MeKO)_02_03_04-216-
aba2-1-MeKO_02_03_048AT1G52340-MeKO_02_03_04
aba3-1-MeKO_02_03_048AT1G16540-MeKO_02_03_04
fad5-1-MeKO_02_03_048AT3G15850-MeKO_02_03_04
fad6-1-MeKO_02_03_048AT4G30950-MeKO_02_03_04
Wild type (JP-MeKO)_02_03_04-316-
CS297-MeKO_02_03_048AT5G64740-MeKO_02_03_04
pad2-1-MeKO_02_03_048AT4G23100-MeKO_02_03_04
pad4-1-MeKO_02_03_048AT3G52430-MeKO_02_03_04
pap1-D-MeKO_02_03_048AT1G56650-MeKO_02_03_04
Wild type (JP-MeKO)_02_03_04-416-
aat2-2-MeKO_05_108AT5G19550-MeKO_05_10
phyB-9-MeKO_05_105AT2G18790-MeKO_05_10
mur1-1-MeKO_05_107AT3G51160-MeKO_05_10-1
Wild type (JP-MeKO)_05_10-215-
mur2-1-MeKO_06_078AT2G03220-MeKO_06_07
mur4-2-MeKO_06_078AT1G30620-MeKO_06_07
cla-1S-MeKO_06_078AT4G15560-MeKO_06_07
Wild type (JP-MeKO)_06_07-216-
fus6-1S-MeKO_06_078AT3G61140-MeKO_06_07
pac-1S-MeKO_06_078AT2G48120-MeKO_06_07
Wild type (JP-MeKO)_06_07-316-
cob-2-MeKO_06_078AT5G60920-MeKO_06_07
cim14-MeKO_06_078CIM14-MeKO_06_07
mur5-1-MeKO_06_078MUR5-MeKO_06_07
mur6-1-MeKO_06_078MUR6-MeKO_06_07
Wild type (JP-MeKO)_06_07-416-
mur7-1-MeKO_08_11_128MUR7-MeKO_08_11_12
mur8-1-MeKO_08_11_128MUR8-MeKO_08_11_12
cim10-MeKO_08_11_128CIM10-MeKO_08_11_12
tbr-1-MeKO_08_11_128AT5G06700-MeKO_08_11_12
Wild type (JP-MeKO)_08_11_12-216-
eto3-MeKO_01_097AT3G49700-MeKO_01_09
gsr1-1-MeKO_01_098GSR1-MeKO_01_09
cim7-MeKO_01_098CIM7-MeKO_01_09
Wild type (JP-MeKO)_01_09-316-
ixr1-2-MeKO_01_098AT5G05170-MeKO_01_09
eto1-1-MeKO_01_098AT3G51770-MeKO_01_09
Wild type (JP-MeKO)_01_09-416-
mur3-2-MeKO_05_107AT2G20370-MeKO_05_10
fur1-1-MeKO_05_106AT4G05120-MeKO_05_10
mur1-2-MeKO_05_108AT3G51160-MeKO_05_10-2
Wild type (JP-MeKO)_05_10-314-
ixr1-1-MeKO_05_108AT5G05170-MeKO_05_10
rsw1-1-MeKO_05_107AT4G32410-MeKO_05_10
rsw3-1-MeKO_05_108AT5G63840-MeKO_05_10
Wild type (JP-MeKO)_05_10-421-
sng1-1-MeKO_08_11_128AT2G22990-MeKO_08_11_12
aba1-6-MeKO_08_11_128AT5G67030-MeKO_08_11_12
pad3-1-MeKO_08_11_128AT3G26830-MeKO_08_11_12
amt1-1-MeKO_08_11_128AT4G13510-MeKO_08_11_12
Wild type (JP-MeKO)_08_11_12-316-
fah1-2-MeKO_08_11_128AT4G36220-MeKO_08_11_12
vtc1-1-MeKO_08_11_128AT2G39770-MeKO_08_11_12
mur11-1-MeKO_08_11_128MUR11-MeKO_08_11_12
Wild type (JP-MeKO)_08_11_12-415-

1 Platforms

Platform: RIKEN MeKO-GC-TOF/MS

+ Platform description



+ Biological metadata
Metabolite Search

<<

Chemically defined metabolites in this experiment:

M000000_A123002-101_CONT_1228.8_EIQTMS_
        Mekomodpred01_ID021
M000000_A126003-101_MST_1247.8_EIQTMS_
        Mekomodpred01_ID036
M000000_A136002-101_MST_1337.3_EIQTMS_
        Mekomodpred01_ID055
M000000_A148006-101_MST_1480.5_EITTMS_
        Mekomodpred01_ID072
M000000_A151002-101_MST_1509.5_EITTMS_
        Mekomodpred01_ID077
M000000_A159003-101_MST_1585.2_EITTMS_
        Mekomodpred01_ID091
M000000_A160005-101_MST_1596.8_EIQTMS_
        Mekomodpred01_ID094
M000000_A174001-101_MST_1744.8_EITTMS_
        Mekomodpred01_ID114
M000000_A177004-101_MST_1770.9_EITTMS_
        Mekomodpred01_ID120
M000000_A180004-101_MST_1795.4_EITTMS_
        Mekomodpred01_ID112
M000000_A197003-101_MST_1967.6_EITTMS_
        Mekomodpred01_ID138
M000000_A197003-101_MST_1967.6_EITTMS_
        Mekomodpred01_ID193
M000000_A197003-101_MST_1967.6_EITTMS_
        Mekomodpred01_ID194
M000000_A205004-101_MST_2049.6_EITTMS_
        Mekomodpred01_ID156
M000000_A206002-101_MST_2066.3_EITTMS_
        Mekomodpred01_ID155
M000000_A207003-101_MST_2072_EITTMS_
        Mekomodpred01_ID243
M000000_A211001-101_MST_2105.7_EITTMS_
        Mekomodpred01_ID159
M000000_A214003-101_MST_2134.3_EITTMS_
        Mekomodpred01_ID162
M000000_A217004-101_MST_2174.6_EITTMS_
        Mekomodpred01_ID165
M000000_A218002-101_MST_2182.9_EITTMS_
        Mekomodpred01_ID168
M000000_A231002-101_MST_2301.7_EIGTMS_
        Mekomodpred01_ID163
M000000_A237002-101_MST_2370.2_EITTMS_
        Mekomodpred01_ID191
M000000_A237002-101_MST_2370.2_EITTMS_
        Mekomodpred01_ID192
M000000_A242001-101_MST_2419.3_EITTMS_
        Mekomodpred01_ID140
M000000_A250001-101_MST_2495.5_EITTMS_
        Mekomodpred01_ID203
M000000_A256004-101_MST_2565.3_EIQTMS_
        Mekomodpred01_ID205
M000000_A301003-101_MST_3033.1_EIQTMS_
        Mekomodpred01_ID236
M000000_A301003-101_MST_3033.1_EIQTMS_
        Mekomodpred01_ID244
M000000_A313001-101_MST_3139.9_EIQTMS_
        Mekomodpred01_ID254
M000013_A157012-101_MST_1588.3_EISTR_
        Mekomodpred01_ID088
alpha-linolenic acid
alpha-tocopherol
arginine
beta-alanine
citric acid
D-Fructose
D-glucose
fructose
fumaric acid
galactonic acid
glyceric acid
glycine
hydroxylamine
L-Alanine
L-Asparagine
L-Aspartic acid
L-Glutamic acid
L-Glutamine
L-isoleucine
L-Leucine
L-Lysine
L-Ornithine
L-Phenylalanine
L-Proline
L-Serine
L-Threonine
L-Tyrosine
L-Valine
lactic acid
linoleic acid
myo-Inositol
nicotianamine
palmitic acid
phosphoric acid
phytol
putrescine
shikimic acid
Sinapic acid
sitosterol
spermidine
stearic acid
succinic acid
sucrose
urea
4-aminobutyric acid
dehydro-l-ascorbic acid dimer
dihydrouracil
d-fructose-6-phosphate
d-glucose-6-phosphate
glycero-3-phosphate
inositol-1-phosphate
3-amino-piperidin-2-one
l-5-oxoproline
d-ribose
l-threonic acid
threonic acid-1,4-lactone
l-tryptophane

Volcano Plot?

Sample 1:

Sample 2: