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Arabidopsis thaliana Species Overview

Experiment: Methylation-KO 1 RIKEN (Comparison of Arabidopsis methylation gene knockout (MeKO) mutants. Batch 1. RIKEN)

Sample Name ReplicatesDescription
aba1-5_MeKO_01_0914AT5G67030
rsw2-1_MeKO_01_098AT5G49720
cim6_MeKO_01_098CIM6
col-0_MeKO_01_09_col_lot4_18
col-0_MeKO_01_09_col_Jun08_115
eto3_MeKO_01_097AT3G49700
gsr1-1_MeKO_01_098GSR1
cim7_MeKO_01_098CIM7
col-0_MeKO_01_09_col_lot3_18
ixr1-2_MeKO_01_098AT5G05170
eto1-1_MeKO_01_098AT3G51770
col-0_MeKO_01_09_col_lot3_28
col-0_MeKO_01_09_col_Jun08_28

1 Platforms

Platform: RIKEN MeKO-GC-TOF/MS

+ Platform description



+ Biological metadata
Metabolite Search

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Chemically defined metabolites in this experiment:

Aconitate
        RDA_090827_MeKO_01_09_ID293
Aconitic acid, cis- (3TMS)
        090827_MeKO_01_09_ID125
Alanine (2TMS)
        090827_MeKO_01_09_ID024
Alanine, 3-cyano-, L- (2TMS)
        090827_MeKO_01_09_ID075
Alanine, beta- (3TMS)
        090827_MeKO_01_09_ID079
Arabinose, D- (1MEOX) (4TMS)
        090827_MeKO_01_09_ID114
Arginine, DL-, -NH3 (3TMS)
        090827_MeKO_01_09_ID138
Asparagine, DL- (3TMS)
        090827_MeKO_01_09_ID117
Aspartic acid, L- (3TMS)
        090827_MeKO_01_09_ID088
Butyric acid, 4-amino- (3TMS)
        090827_MeKO_01_09_ID094
Caffeic acid, trans- (3TMS)
        090827_MeKO_01_09_ID169
Citric acid (4TMS)
        090827_MeKO_01_09_ID136
Cysteine, DL- (3TMS)
        090827_MeKO_01_09_ID097
Cystine, L- (4TMS)
        090827_MeKO_01_09_ID181
Dihydrouracil (2TMS)
        090827_MeKO_01_09_ID032
Ethanolaminephosphate (4TMS)
        090827_MeKO_01_09_ID132
Fructose, D- (1MEOX) (5TMS)
        090827_MeKO_01_09_ID141
Fructose-6-phosphate (1MEOX) (6TMS)
        090827_MeKO_01_09_ID179
Fumaric acid (2TMS)
        090827_MeKO_01_09_ID072
Galactinol (9TMS)
        090827_MeKO_01_09_ID227
Galacturonic acid, D- (1MEOX) (5TMS)
        090827_MeKO_01_09_ID155
Gluconic acid (6TMS)
        090827_MeKO_01_09_ID159
Glucose-6-phosphate (1MEOX) (6TMS)
        090827_MeKO_01_09_ID182
Glucose1
        RDA_090827_MeKO_01_09_ID270
Glutamate
        RDA_090827_MeKO_01_09_ID269
Glutamine, DL- (3TMS)
        090827_MeKO_01_09_ID131
Glutaric acid (2TMS)
        090827_MeKO_01_09_ID077
Glutaric acid, 2-oxo- (1MEOX) (2TMS)
        090827_MeKO_01_09_ID099
Glyceric acid, DL- (3TMS)
        090827_MeKO_01_09_ID068
glycerol-3-phosphate, DL- (4TMS)
        090827_MeKO_01_09_ID127
Glycine (2TMS)
        090827_MeKO_01_09_ID027
Glycolic acid (2TMS)
        090827_MeKO_01_09_ID019
Hexadecanoate
        RDA_090827_MeKO_01_09_ID273
histidine
        RDA_090827_MeKO_01_09_ID280
Homoserine, DL- (3TMS)
        090827_MeKO_01_09_ID080
Hydroxylamine (3TMS)
        090827_MeKO_01_09_ID026
Inositol, myo- (6TMS)
        090827_MeKO_01_09_ID167
Inositol-1-phosphate, myo- (7TMS)
        090827_MeKO_01_09_ID192
Isocitric acid, DL- (4TMS)
        090827_MeKO_01_09_ID135
Isoleucine, L- (2TMS)
        090827_MeKO_01_09_ID060
Lactic acid, DL- (2TMS)
        090827_MeKO_01_09_ID015
leucine
        RDA_090827_MeKO_01_09_ID276
Lumichrome (2MEOX)
        090827_MeKO_01_09_ID071
Lysine, L- (4TMS)
        090827_MeKO_01_09_ID150
M000000_A123002-101_CONT_1228.8_EIQTMS
        090827_MeKO_01_09_ID035
M000000_A126003-101_MST_1247.8_EIQTMS
        090827_MeKO_01_09_ID053
M000000_A148006-101_MST_1480.5_EITTMS
        090827_MeKO_01_09_ID084
M000000_A151002-101_MST_1509.5_EITTMS
        090827_MeKO_01_09_ID087
M000000_A159003-101_MST_1585.2_EITTMS
        090827_MeKO_01_09_ID100
M000000_A174001-101_MST_1744.8_EITTMS
        090827_MeKO_01_09_ID124
M000000_A177004-101_MST_1770.9_EITTMS
        090827_MeKO_01_09_ID128
M000000_A211001-101_MST_2105.7_EITTMS
        090827_MeKO_01_09_ID168
M000000_A218002-101_MST_2182.9_EITTMS
        090827_MeKO_01_09_ID171
M000000_A231002-101_MST_2309.5_EITTMS
        090827_MeKO_01_09_ID180
M000000_A237002-101_MST_2370.2_EITTMS
        090827_MeKO_01_09_ID187
M000000_A242009-101_MST_2429.6_EIQTMS
        090827_MeKO_01_09_ID188
M000000_A250001-101_MST_2495.5_EITTMS
        090827_MeKO_01_09_ID195
M000000_A251003-101_MST_2507.9_EITTMS
        090827_MeKO_01_09_ID197
M000000_A301003-101_MST_3008.8_EITTMS
        090827_MeKO_01_09_ID228
Malic acid, DL- (3TMS)
        090827_MeKO_01_09_ID085
Maltose, D- (1MEOX) (8TMS)
        090827_MeKO_01_09_ID211
Mannose, D- (1MEOX) (5TMS)
        090827_MeKO_01_09_ID144
Methionine, DL- (2TMS)
        090827_MeKO_01_09_ID091
Nicotinic acid (1TMS)
        090827_MeKO_01_09_ID062
Octadecadienoic acid, 9,12-(Z,Z)-, n- (1TMS)
        090827_MeKO_01_09_ID175
Octadecatrienoic acid, 9,12,15-(Z,Z,Z)-, n- (1TMS)
        090827_MeKO_01_09_ID176
Ornithine, DL- (4TMS)
        090827_MeKO_01_09_ID137
Phenylalanine, DL- (2TMS)
        090827_MeKO_01_09_ID112
Phosphoric acid (3TMS)
        090827_MeKO_01_09_ID058
Phytol (1TMS)
        090827_MeKO_01_09_ID172
Piperidin-2-one, 3-amino- (2TMS)
        090827_MeKO_01_09_ID083
proline
        RDA_090827_MeKO_01_09_ID266
Propane, 1,3-diamino- (4TMS)
        090827_MeKO_01_09_ID115
putrescine
        RDA_090827_MeKO_01_09_ID272
Pyridine, 2-hydroxy- (1TMS)
        090827_MeKO_01_09_ID010
Pyroglutamate
        RDA_090827_MeKO_01_09_ID268
Quinic acid, D(-)- (5TMS)
        090827_MeKO_01_09_ID139
Ribitol, D- (5TMS)
        090827_MeKO_01_09_ID122
Ribose, D- (1MEOX) (4TMS)
        090827_MeKO_01_09_ID116
Saccharic acid (6TMS)
        090827_MeKO_01_09_ID111
Serine, L- (3TMS)
        090827_MeKO_01_09_ID073
Shikimic acid (4TMS)
        090827_MeKO_01_09_ID133
Silane, trimethyl(1-methylethoxy)-
        090827_MeKO_01_09_ID002
Sinapate
        RDA_090827_MeKO_01_09_ID294
Sinapic acid, cis- (2TMS)
        090827_MeKO_01_09_ID166
Sitosterol, beta- (1TMS)
        090827_MeKO_01_09_ID249
Spermidine (5TMS)
        090827_MeKO_01_09_ID178
Suberic acid (2TMS)
        090827_MeKO_01_09_ID119
Succinate
        RDA_090827_MeKO_01_09_ID267
sucrose
        RDA_090827_MeKO_01_09_ID271
Threonic acid (4TMS)
        090827_MeKO_01_09_ID095
Threonine, DL- (3TMS)
        090827_MeKO_01_09_ID076
Tocopherol, alpha- (1TMS)
        090827_MeKO_01_09_ID236
Trehalose, alpha,alpha'-, D- (8TMS)
        090827_MeKO_01_09_ID209
Tryptamine (3TMS)
        090827_MeKO_01_09_ID177
Tryptamine, 5-hydroxy- (4TMS)
        090827_MeKO_01_09_ID196
Tyrosine, L- (3TMS)
        090827_MeKO_01_09_ID152
Urea (2TMS)
        090827_MeKO_01_09_ID055
Valine, DL- (2TMS)
        090827_MeKO_01_09_ID048

Volcano Plot?

Sample 1:

Sample 2: