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Experiment: Methylation-KO 2 RIKEN (Comparison of Arabidopsis methylation gene knockout (MeKO) mutants. Batch 2. RIKEN)

Sample Name ReplicatesDescription
aba2-1_MeKO_02_03_048AT1G52340
aba3-1_MeKO_02_03_048AT1G16540
cim11_MeKO_02_03_048CIM11
cim13_MeKO_02_03_048CIM13
cim9_MeKO_02_03_048CIM9
col-0_MeKO_02_03_04_Col_Jun08_18
col-0_MeKO_02_03_04_Col_Jun08_28
col-0_MeKO_02_03_04_Col_Jun08_38
col-0_MeKO_02_03_04_Col_lot2_18
col-0_MeKO_02_03_04_Col_lot2_28
col-0_MeKO_02_03_04_Col_lot48
CS297_MeKO_02_03_048AT5G64740
fad5-1_MeKO_02_03_048AT3G15850
fad6-1_MeKO_02_03_048AT4G30950
mur9-1_MeKO_02_03_048MUR9
pad2-1_MeKO_02_03_048AT4G23100
pad4-1_MeKO_02_03_048AT3G52430
pap1-D_MeKO_02_03_048AT1G56650

1 Platforms

Platform: RIKEN MeKO-GC-TOF/MS

+ Platform description



+ Biological metadata
Metabolite Search

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Chemically defined metabolites in this experiment:

3-Cyanoalanine
        RDA_090911MeKO_02_03_04_ID269
7-(Trimethylsilyl)-2,6-bis[(trimethylsilyl)oxy]-7H-purine
        090911MeKO_02_03_04_ID133
Aconitate
        RDA_090911MeKO_02_03_04_ID266
Aconitic acid, cis- (3TMS)
        090911MeKO_02_03_04_ID104
Alanine (2TMS)
        090911MeKO_02_03_04_ID015
Alanine, beta- (3TMS)
        090911MeKO_02_03_04_ID060
Arabinose, D- (1MEOX) (4TMS)
        090911MeKO_02_03_04_ID095
Arginine, DL-, -NH3 (3TMS)
        090911MeKO_02_03_04_ID115
Asparagine [-H2O] (2TMS)
        090911MeKO_02_03_04_ID070
Aspartic acid, L- (3TMS)
        090911MeKO_02_03_04_ID071
Butyric acid, 4-amino- (3TMS)
        090911MeKO_02_03_04_ID078
Caffeic acid, trans- (3TMS)
        090911MeKO_02_03_04_ID141
Citric acid (4TMS)
        090911MeKO_02_03_04_ID113
Cysteine, DL- (3TMS)
        090911MeKO_02_03_04_ID081
Cystine, L- (4TMS)
        090911MeKO_02_03_04_ID156
Dihydrouracil (2TMS)
        090911MeKO_02_03_04_ID021
Docosane, n-
        090911MeKO_02_03_04_ID148
dodecane
        090911MeKO_02_03_04_ID035
Fructose, D- (1MEOX) (5TMS)
        090911MeKO_02_03_04_ID120
Fructose-6-phosphate (1MEOX) (6TMS)
        090911MeKO_02_03_04_ID154
Fumaric acid (2TMS)
        090911MeKO_02_03_04_ID051
Galactinol (9TMS)
        090911MeKO_02_03_04_ID204
Galacturonic acid, D- (1MEOX) (5TMS)
        090911MeKO_02_03_04_ID128
Gluconic acid (6TMS)
        090911MeKO_02_03_04_ID130
Glucose-6-phosphate (1MEOX) (6TMS)
        090911MeKO_02_03_04_ID157
Glucose1
        RDA_090911MeKO_02_03_04_ID244
Glutamate
        RDA_090911MeKO_02_03_04_ID243
Glutamine [-H2O] (3TMS) MP
        090911MeKO_02_03_04_ID090
Glutamine, DL- (3TMS)
        090911MeKO_02_03_04_ID109
Glutaric acid (2TMS)
        090911MeKO_02_03_04_ID058
Glutaric acid, 2-oxo- (1MEOX) (2TMS)
        090911MeKO_02_03_04_ID083
Glycerate
        RDA_090911MeKO_02_03_04_ID258
glycerol-3-phosphate, DL- (4TMS)
        090911MeKO_02_03_04_ID106
Glycine (2TMS)
        090911MeKO_02_03_04_ID018
Glycolic acid (2TMS)
        090911MeKO_02_03_04_ID011
Henicosane, n-
        090911MeKO_02_03_04_ID140
heptacosane
        090911MeKO_02_03_04_ID184
Hexadecanoate
        RDA_090911MeKO_02_03_04_ID247
histidine
        RDA_090911MeKO_02_03_04_ID254
Homoserine, DL- (3TMS)
        090911MeKO_02_03_04_ID062
Hydroxylamine (3TMS)
        090911MeKO_02_03_04_ID017
Inositol, myo- (6TMS)
        090911MeKO_02_03_04_ID138
Inositol-1-phosphate, myo- (7TMS)
        090911MeKO_02_03_04_ID167
Isocitric acid, DL- (4TMS)
        090911MeKO_02_03_04_ID112
Isoleucine (2TMS)
        090911MeKO_02_03_04_ID043
Lactate
        RDA_090911MeKO_02_03_04_ID274
leucine
        RDA_090911MeKO_02_03_04_ID250
Lumichrome (2MEOX)
        090911MeKO_02_03_04_ID049
Lysine, L- (4TMS)
        090911MeKO_02_03_04_ID125
M000000_A123002-101_CONT_1228.8_EIQTMS
        090911MeKO_02_03_04_ID025
M000000_A126003-101_MST_1247.8_EIQTMS
        090911MeKO_02_03_04_ID037
M000000_A148002-101_MST_1481.6_EITTMS
        090911MeKO_02_03_04_ID067
M000000_A148006-101_MST_1480.5_EITTMS
        090911MeKO_02_03_04_ID066
M000000_A159001-101_MST_1594.9_EITTMS
        090911MeKO_02_03_04_ID088
M000000_A159001-111_IS (QUAN)_1594.8_EITTMS
        090911MeKO_02_03_04_ID087
M000000_A159003-101_MST_1585.2_EITTMS
        090911MeKO_02_03_04_ID085
M000000_A174001-101_MST_1744.8_EITTMS
        090911MeKO_02_03_04_ID103
M000000_A177004-101_MST_1770.9_EITTMS
        090911MeKO_02_03_04_ID107
M000000_A211001-101_MST_2105.7_EITTMS
        090911MeKO_02_03_04_ID139
M000000_A217004-101_MST_2174.6_EITTMS
        090911MeKO_02_03_04_ID142
M000000_A218002-101_MST_2182.9_EITTMS
        090911MeKO_02_03_04_ID144
M000000_A231002-101_MST_2301.7_EIGTMS
        090911MeKO_02_03_04_ID155
M000000_A237002-101_MST_2370.2_EITTMS
        090911MeKO_02_03_04_ID163
M000000_A250001-101_MST_2495.5_EITTMS
        090911MeKO_02_03_04_ID170
M000000_A308003-101_MST_3075.4_EITTMS
        090911MeKO_02_03_04_ID183
Malic acid, DL- (3TMS)
        090911MeKO_02_03_04_ID068
Maltose, D- (1MEOX) (8TMS)
        090911MeKO_02_03_04_ID187
Mannose, D- (1MEOX) (5TMS)
        090911MeKO_02_03_04_ID121
Methionine, DL- (2TMS)
        090911MeKO_02_03_04_ID074
Nicotinic acid (1TMS)
        090911MeKO_02_03_04_ID046
Nonacosane
        090911MeKO_02_03_04_ID200
Octacosane, n-
        090911MeKO_02_03_04_ID191
Octadecadienoic acid, 9,12-(Z,Z)-, n- (1TMS)
        090911MeKO_02_03_04_ID149
Octadecatrienoic acid, 9,12,15-(Z,Z,Z)-, n- (1TMS)
        090911MeKO_02_03_04_ID150
Ornithine, DL- (4TMS)
        090911MeKO_02_03_04_ID114
Phenylalanine, DL- (2TMS)
        090911MeKO_02_03_04_ID094
Phosphoric acid (3TMS)
        090911MeKO_02_03_04_ID042
Phytol (1TMS)
        090911MeKO_02_03_04_ID145
Piperidin-2-one, 3-amino- (2TMS)
        090911MeKO_02_03_04_ID065
proline
        RDA_090911MeKO_02_03_04_ID240
Propane, 1,3-diamino- (4TMS)
        090911MeKO_02_03_04_ID096
putrescine
        RDA_090911MeKO_02_03_04_ID246
Pyridine, 2-hydroxy- (1TMS)
        090911MeKO_02_03_04_ID007
Pyroglutamate
        RDA_090911MeKO_02_03_04_ID242
Quinic acid, D(-)- (5TMS)
        090911MeKO_02_03_04_ID117
Ribitol, D- (5TMS)
        090911MeKO_02_03_04_ID101
Ribose, D- (1MEOX) (4TMS)
        090911MeKO_02_03_04_ID097
Serine, DL- (3TMS)
        090911MeKO_02_03_04_ID053
Shikimic acid (4TMS)
        090911MeKO_02_03_04_ID111
Silane, trimethyl(phenylmethoxy)-
        090911MeKO_02_03_04_ID026
Sinapate
        RDA_090911MeKO_02_03_04_ID267
Sitosterol, beta- (1TMS)
        090911MeKO_02_03_04_ID223
Spermidine (5TMS)
        090911MeKO_02_03_04_ID152
Suberic acid (2TMS)
        090911MeKO_02_03_04_ID099
Succinate
        RDA_090911MeKO_02_03_04_ID241
sucrose
        RDA_090911MeKO_02_03_04_ID245
Threonic acid (4TMS)
        090911MeKO_02_03_04_ID079
Threonine, DL- (3TMS)
        090911MeKO_02_03_04_ID057
Tocopherol, alpha- (1TMS)
        090911MeKO_02_03_04_ID214
Trehalose, alpha,alpha'-, D- (8TMS)
        090911MeKO_02_03_04_ID185
Tricosane, n-
        090911MeKO_02_03_04_ID158
Tryptamine (3TMS)
        090911MeKO_02_03_04_ID151
Tryptamine, 5-hydroxy- (4TMS)
        090911MeKO_02_03_04_ID171
Tyrosine, L- (3TMS)
        090911MeKO_02_03_04_ID127
Urea (2TMS)
        090911MeKO_02_03_04_ID039
Valine, DL- (2TMS)
        090911MeKO_02_03_04_ID036

Volcano Plot?

Sample 1:

Sample 2: