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Experiment: Methylation-KO 3 RIKEN (Comparison of Arabidopsis methylation gene knockout (MeKO) mutants. Batch 3. RIKEN)

Sample Name ReplicatesDescription
cim14_MeKO_06_078CIM14
cla-1S_MeKO_06_078AT4G15560
cob-2_MeKO_06_078AT5G60920
col-0_MeKO_06_07_Col_Jun08_18
col-0_MeKO_06_07_Col_Jun08_216
col-0_MeKO_06_07_Col_Jun08_316
col-0_MeKO_06_07_Col_lot2_18
fus6-1S_MeKO_06_078AT3G61140
mur2-1_MeKO_06_078AT2G03220
mur4-2_MeKO_06_078AT1G30620
mur5-1_MeKO_06_078MUR5
mur6-1_MeKO_06_078MUR6
pac-1S_MeKO_06_078AT2G48120

1 Platforms

Platform: RIKEN MeKO-GC-TOF/MS

+ Platform description



+ Biological metadata
Metabolite Search

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Chemically defined metabolites in this experiment:

3-Cyanoalanine
        RDA_091002MeKO_06_07_ID265
Aconitate
        RDA_091002MeKO_06_07_ID279
Aconitic acid, cis- (3TMS)
        091002MeKO_06_07_ID103
Alanine (2TMS)
        091002MeKO_06_07_ID016
Alanine, beta- (3TMS)
        091002MeKO_06_07_ID057
Arabinose, D- (1MEOX) (4TMS)
        091002MeKO_06_07_ID093
Arginine, DL-, -NH3 (3TMS)
        091002MeKO_06_07_ID114
Asparagine, DL- (3TMS)
        091002MeKO_06_07_ID096
Aspartic acid, L- (3TMS)
        091002MeKO_06_07_ID070
Butyric acid, 4-amino- (3TMS)
        091002MeKO_06_07_ID075
Caffeic acid, trans- (3TMS)
        091002MeKO_06_07_ID149
Citric acid (4TMS)
        091002MeKO_06_07_ID112
Cysteine, DL- (3TMS)
        091002MeKO_06_07_ID078
Cystine, L- (4TMS)
        091002MeKO_06_07_ID163
D-(+)-Gluconic acid delta-lactone (4TMS)
        091002MeKO_06_07_ID124
Dihydrouracil (2TMS)
        091002MeKO_06_07_ID021
Erythritol (4TMS)
        091002MeKO_06_07_ID067
Fructose, D- (1MEOX) (5TMS)
        091002MeKO_06_07_ID119
Fructose-6-phosphate (1MEOX) (6TMS)
        091002MeKO_06_07_ID162
Fumaric acid (2TMS)
        091002MeKO_06_07_ID051
Galactinol (9TMS)
        091002MeKO_06_07_ID210
Galacturonic acid, D- (1MEOX) (5TMS)
        091002MeKO_06_07_ID130
Gluconic acid (6TMS)
        091002MeKO_06_07_ID137
Glucose-6-phosphate (1MEOX) (6TMS)
        091002MeKO_06_07_ID164
Glucose1
        RDA_091002MeKO_06_07_ID253
Glucuronic acid-e-lactone, DL- (MEOX) (3TMS)
        091002MeKO_06_07_ID115
Glutamate
        RDA_091002MeKO_06_07_ID252
Glutamine, DL- (3TMS)
        091002MeKO_06_07_ID108
Glutaric acid (2TMS)
        091002MeKO_06_07_ID056
Glutaric acid, 2-oxo- (1MEOX) (2TMS)
        091002MeKO_06_07_ID080
Glyceric acid, DL- (3TMS)
        091002MeKO_06_07_ID048
Glycolic acid (2TMS)
        091002MeKO_06_07_ID012
Hexadecanoate
        RDA_091002MeKO_06_07_ID255
histidine
        RDA_091002MeKO_06_07_ID272
Homoserine, DL- (3TMS)
        091002MeKO_06_07_ID058
Hydroxylamine (3TMS)
        091002MeKO_06_07_ID019
Inositol, myo- (6TMS)
        091002MeKO_06_07_ID147
Inositol-1-phosphate, myo- (7TMS)
        091002MeKO_06_07_ID175
Isocitric acid, DL- (4TMS)
        091002MeKO_06_07_ID111
Isoleucine (2TMS)
        091002MeKO_06_07_ID042
Lactic acid, DL- (2TMS)
        091002MeKO_06_07_ID010
leucine
        RDA_091002MeKO_06_07_ID270
Lumichrome (2MEOX)
        091002MeKO_06_07_ID049
Lysine (4TMS)
        091002MeKO_06_07_ID129
M000000_A123002-101_CONT_1228.8_EIQTMS
        091002MeKO_06_07_ID024
M000000_A126003-101_MST_1247.8_EIQTMS
        091002MeKO_06_07_ID035
M000000_A148002-101_MST_1478.4_EIQTMS
        091002MeKO_06_07_ID063
M000000_A148006-101_MST_1480.5_EITTMS
        091002MeKO_06_07_ID062
M000000_A151002-101_MST_1509.5_EITTMS
        091002MeKO_06_07_ID069
M000000_A159003-101_MST_1585.2_EITTMS
        091002MeKO_06_07_ID081
M000000_A160005-101_MST_1596.8_EIQTMS
        091002MeKO_06_07_ID083
M000000_A174001-101_MST_1744.8_EITTMS
        091002MeKO_06_07_ID102
M000000_A177004-101_MST_1770.9_EITTMS
        091002MeKO_06_07_ID105
M000000_A180004-101_MST_1795.4_EITTMS
        091002MeKO_06_07_ID101
M000000_A197003-101_MST_1967.6_EITTMS
        091002MeKO_06_07_ID128
M000000_A206002-101_MST_2066.3_EITTMS
        091002MeKO_06_07_ID145
M000000_A211001-101_MST_2105.7_EITTMS
        091002MeKO_06_07_ID148
M000000_A237002-101_MST_2370.2_EITTMS
        091002MeKO_06_07_ID170
M000000_A250001-101_MST_2495.5_EITTMS
        091002MeKO_06_07_ID177
M000000_A301003-101-xxx_NA_2996.83_PRED_VAR5_ALK_NA
        091002MeKO_06_07_ID204
M000000_A301003-101_MST_3008.8_EITTMS
        091002MeKO_06_07_ID211
Malic acid, DL- (3TMS)
        091002MeKO_06_07_ID065
Maltose, D- (1MEOX) (8TMS)
        091002MeKO_06_07_ID194
Mannose, D- (1MEOX) (5TMS)
        091002MeKO_06_07_ID121
Methionine, DL- (2TMS)
        091002MeKO_06_07_ID072
Nicotinic acid (1TMS)
        091002MeKO_06_07_ID044
Octadecadienoic acid, 9,12-(Z,Z)-, n- (1TMS)
        091002MeKO_06_07_ID157
Octadecatrienoic acid, 9,12,15-(Z,Z,Z)-, n- (1TMS)
        091002MeKO_06_07_ID158
Ornithine, DL- (4TMS)
        091002MeKO_06_07_ID113
Phenylalanine, DL- (2TMS)
        091002MeKO_06_07_ID092
Phosphoric acid (3TMS)
        091002MeKO_06_07_ID039
Phytol (1TMS)
        091002MeKO_06_07_ID153
Piperidin-2-one, 3-amino- (2TMS)
        091002MeKO_06_07_ID061
proline
        RDA_091002MeKO_06_07_ID250
Propane, 1,3-diamino- (4TMS)
        091002MeKO_06_07_ID094
putrescine
        RDA_091002MeKO_06_07_ID269
Pyroglutamate
        RDA_091002MeKO_06_07_ID251
Quinic acid, D(-)- (5TMS)
        091002MeKO_06_07_ID117
Ribitol, D- (5TMS)
        091002MeKO_06_07_ID100
Ribose, D- (1MEOX) (4TMS)
        091002MeKO_06_07_ID095
Serine, DL- (3TMS)
        091002MeKO_06_07_ID052
Shikimic acid (4TMS)
        091002MeKO_06_07_ID110
Sinapate
        RDA_091002MeKO_06_07_ID264
Sitosterol, beta- (1TMS)
        091002MeKO_06_07_ID231
Spermidine (5TMS)
        091002MeKO_06_07_ID160
Suberic acid (2TMS)
        091002MeKO_06_07_ID098
Succinate
        RDA_091002MeKO_06_07_ID268
sucrose
        RDA_091002MeKO_06_07_ID254
Threonic acid (4TMS)
        091002MeKO_06_07_ID076
Threonine, DL- (3TMS)
        091002MeKO_06_07_ID055
Tocopherol, alpha- (1TMS)
        091002MeKO_06_07_ID220
Trehalose, alpha,alpha'-, D- (8TMS)
        091002MeKO_06_07_ID193
Tryptamine (3TMS)
        091002MeKO_06_07_ID159
Tryptamine, 5-hydroxy- (3TMS)
        091002MeKO_06_07_ID181
Tryptamine, 5-hydroxy- (4TMS)
        091002MeKO_06_07_ID178
Tyrosine, L- (3TMS)
        091002MeKO_06_07_ID131
Urea (2TMS)
        091002MeKO_06_07_ID036
Valine, DL- (2TMS)
        091002MeKO_06_07_ID034

Volcano Plot?

Sample 1:

Sample 2: