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Arabidopsis thaliana Species Overview

Experiment: Methylation-KO 4 RIKEN (Comparison of Arabidopsis methylation gene knockout (MeKO) mutants. Batch 4. RIKEN)

Sample Name ReplicatesDescription
aba1-6_MeKO_08_11_128AT5G67030
amt1-1_MeKO_08_11_128AT4G13510
cim10_MeKO_08_11_128CIM10
col-0_MeKO_08_11_12_ col_Jun08_38
col-0_MeKO_08_11_12_col _Sep 06_18
col-0_MeKO_08_11_12_col_ Sep 06_27
col-0_MeKO_08_11_12_Col_Jun08_18
col-0_MeKO_08_11_12_col_Jun08_28
col-0_MeKO_08_11_12_Col_lot3_18
fah1-2_MeKO_08_11_128AT4G36220
mur11-1_MeKO_08_11_128MUR11
mur7-1_MeKO_08_11_128MUR7
mur8-1_MeKO_08_11_128MUR8
pad3-1_MeKO_08_11_128AT3G26830
sng1-1_MeKO_08_11_128AT2G22990
tbr-1_MeKO_08_11_128AT5G06700
vtc1-1_MeKO_08_11_128AT2G39770

1 Platforms

Platform: RIKEN MeKO-GC-TOF/MS

+ Platform description



+ Biological metadata
Metabolite Search

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Chemically defined metabolites in this experiment:

3-Cyanoalanine
        RDA_091008MeKO_08_11_12_ID300
Aconitate
        RDA_091008MeKO_08_11_12_ID297
Aconitic acid, cis- (3TMS)
        091008MeKO_08_11_12_ID122
Alanine (2TMS)
        091008MeKO_08_11_12_ID012
Alanine, beta- (3TMS)
        091008MeKO_08_11_12_ID077
Arabinose, D- (1MEOX) (4TMS)
        091008MeKO_08_11_12_ID111
Arginine, DL-, -NH3 (3TMS)
        091008MeKO_08_11_12_ID132
Asparagine, DL- (3TMS)
        091008MeKO_08_11_12_ID114
Aspartic acid, L- (3TMS)
        091008MeKO_08_11_12_ID090
Benzoic acid, (1TMS)
        091008MeKO_08_11_12_ID051
Butyric acid, 4-amino- (3TMS)
        091008MeKO_08_11_12_ID095
Caffeic acid, cis- (3TMS)
        091008MeKO_08_11_12_ID151
Citric acid (4TMS)
        091008MeKO_08_11_12_ID130
Cysteine, DL- (3TMS)
        091008MeKO_08_11_12_ID098
Cystine, L- (4TMS)
        091008MeKO_08_11_12_ID181
Dihydrouracil (2TMS)
        091008MeKO_08_11_12_ID021
Erythritol (4TMS)
        091008MeKO_08_11_12_ID087
Fructose, D- (1MEOX) (5TMS)
        091008MeKO_08_11_12_ID137
Fructose-6-phosphate (1MEOX) (6TMS)
        091008MeKO_08_11_12_ID180
Fumaric acid (2TMS)
        091008MeKO_08_11_12_ID065
Galactinol (9TMS)
        091008MeKO_08_11_12_ID232
Galacturonic acid, D- (1MEOX) (5TMS)
        091008MeKO_08_11_12_ID146
Gluconic acid (6TMS)
        091008MeKO_08_11_12_ID152
Glucose-6-phosphate (1MEOX) (6TMS)
        091008MeKO_08_11_12_ID182
Glucose1
        RDA_091008MeKO_08_11_12_ID275
Glutamate
        RDA_091008MeKO_08_11_12_ID274
Glutamine, DL- (3TMS)
        091008MeKO_08_11_12_ID126
Glutaric acid (2TMS)
        091008MeKO_08_11_12_ID074
Glutaric acid, 2-oxo- (1MEOX) (2TMS)
        091008MeKO_08_11_12_ID100
Glyceric acid, DL- (3TMS)
        091008MeKO_08_11_12_ID056
glycine
        RDA_091008MeKO_08_11_12_ID280
Glycolic acid (2TMS)
        091008MeKO_08_11_12_ID007
Hexadecanoate
        RDA_091008MeKO_08_11_12_ID278
histidine
        RDA_091008MeKO_08_11_12_ID285
Homoserine, DL- (3TMS)
        091008MeKO_08_11_12_ID079
Hydroxylamine (3TMS)
        091008MeKO_08_11_12_ID015
Inositol, myo- (6TMS)
        091008MeKO_08_11_12_ID163
Inositol-1-phosphate, myo- (7TMS)
        091008MeKO_08_11_12_ID193
Isocitric acid, DL- (4TMS)
        091008MeKO_08_11_12_ID128
Isoleucine (2TMS)
        091008MeKO_08_11_12_ID053
Lactic acid, DL- (2TMS)
        091008MeKO_08_11_12_ID005
leucine
        RDA_091008MeKO_08_11_12_ID281
Lumichrome (2MEOX)
        091008MeKO_08_11_12_ID063
Lysine (4TMS)
        091008MeKO_08_11_12_ID145
M000000_A123002-101_CONT_1228.8_EIQTMS
        091008MeKO_08_11_12_ID025
M000000_A126003-101_MST_1247.8_EIQTMS
        091008MeKO_08_11_12_ID045
M000000_A148003-101_MST_1475.9_EITTMS
        091008MeKO_08_11_12_ID085
M000000_A148006-101_MST_1480.5_EITTMS
        091008MeKO_08_11_12_ID084
M000000_A151002-101_MST_1509.5_EITTMS
        091008MeKO_08_11_12_ID089
M000000_A159003-101_MST_1585.2_EITTMS
        091008MeKO_08_11_12_ID101
M000000_A168011-101_MST_1688.6_EIQTMS
        091008MeKO_08_11_12_ID115
M000000_A174001-101_MST_1744.8_EITTMS
        091008MeKO_08_11_12_ID121
M000000_A177004-101_MST_1770.9_EITTMS
        091008MeKO_08_11_12_ID124
M000000_A211001-101_MST_2105.7_EITTMS
        091008MeKO_08_11_12_ID164
M000000_A237002-101_MST_2370.2_EITTMS
        091008MeKO_08_11_12_ID188
M000000_A281001-101_MST_2807.7_EITTMS
        091008MeKO_08_11_12_ID213
M000000_A301003-101_MST_3008.8_EITTMS
        091008MeKO_08_11_12_ID233
M000000_A301003-101_MST_3033.1_EIQTMS
        091008MeKO_08_11_12_ID226
M000000_A313001-101_MST_3139.9_EIQTMS
        091008MeKO_08_11_12_ID240
Malic acid, DL- (3TMS)
        091008MeKO_08_11_12_ID086
Maltose, D- (1MEOX) (8TMS)
        091008MeKO_08_11_12_ID216
Mannose, D- (1MEOX) (5TMS)
        091008MeKO_08_11_12_ID139
Methionine, DL- (2TMS)
        091008MeKO_08_11_12_ID092
Nicotinate
        RDA_091008MeKO_08_11_12_ID282
Octadecatrienoic acid, 9,12,15-(Z,Z,Z)-, n- (1TMS)
        091008MeKO_08_11_12_ID174
Ornithine, DL- (4TMS)
        091008MeKO_08_11_12_ID131
Phenylalanine, DL- (2TMS)
        091008MeKO_08_11_12_ID110
Phosphoric acid (3TMS)
        091008MeKO_08_11_12_ID052
Phytol (1TMS)
        091008MeKO_08_11_12_ID170
Piperidin-2-one, 3-amino- (2TMS)
        091008MeKO_08_11_12_ID083
proline
        RDA_091008MeKO_08_11_12_ID272
Propane, 1,3-diamino- (4TMS)
        091008MeKO_08_11_12_ID112
putrescine
        RDA_091008MeKO_08_11_12_ID277
Pyroglutamate
        RDA_091008MeKO_08_11_12_ID273
Quinic acid, D(-)- (5TMS)
        091008MeKO_08_11_12_ID135
Ribitol, D- (5TMS)
        091008MeKO_08_11_12_ID118
Ribose, D- (1MEOX) (4TMS)
        091008MeKO_08_11_12_ID113
Serine, L- (3TMS)
        091008MeKO_08_11_12_ID067
Shikimic acid (4TMS)
        091008MeKO_08_11_12_ID127
Sinapate
        RDA_091008MeKO_08_11_12_ID298
Sinapic acid, cis- (2TMS)
        091008MeKO_08_11_12_ID160
Sitosterol, beta- (1TMS)
        091008MeKO_08_11_12_ID255
Spermidine (5TMS)
        091008MeKO_08_11_12_ID177
Suberic acid (2TMS)
        091008MeKO_08_11_12_ID116
Succinate
        RDA_091008MeKO_08_11_12_ID304
sucrose
        RDA_091008MeKO_08_11_12_ID276
Threonic acid (4TMS)
        091008MeKO_08_11_12_ID096
Threonine, DL- (3TMS)
        091008MeKO_08_11_12_ID072
Tocopherol, alpha- (1TMS)
        091008MeKO_08_11_12_ID242
Trehalose, alpha,alpha'-, D- (8TMS)
        091008MeKO_08_11_12_ID215
Tryptamine (3TMS)
        091008MeKO_08_11_12_ID175
Tryptamine, 5-hydroxy- (4TMS)
        091008MeKO_08_11_12_ID197
tryptophane
        RDA_091008MeKO_08_11_12_ID306
Tyrosine, L- (3TMS)
        091008MeKO_08_11_12_ID147
Urea (2TMS)
        091008MeKO_08_11_12_ID046
Valine, DL- (2TMS)
        091008MeKO_08_11_12_ID041

Volcano Plot?

Sample 1:

Sample 2: