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Arabidopsis thaliana Species Overview

Experiment: Methylation-KO 5 RIKEN (Comparison of Arabidopsis methylation gene knockout (MeKO) mutants. Batch 5. RIKEN)

Sample Name ReplicatesDescription
aat2-2_MeKO_05_107AT5G19550
phyB-9_MeKO_05_105AT2G18790
mur1-1_MeKO_05_106AT3G51160
col-0_MeKO_05_10_Col_lot2_17
col-0_MeKO_05_10_Col_Jun08_16
mur3-2_MeKO_05_107AT2G20370
fur1-1_MeKO_05_106AT4G05120
mur1-2_MeKO_05_108AT3G51160
col-0_MeKO_05_10_col_lot3_16
col-0_MeKO_05_10_col_Jun08_25
ixr1-1_MeKO_05_108AT5G05170
rsw1-1_MeKO_05_105AT4G32410
rsw3-1_MeKO_05_107AT5G63840
col-0_MeKO_05_10_col_lot2_27
col-0_MeKO_05_10_col_lot3_27
col-0_MeKO_05_10_col_Jun08_37

1 Platforms

Platform: RIKEN MeKO-GC-TOF/MS

+ Platform description



+ Biological metadata
Metabolite Search

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Chemically defined metabolites in this experiment:

Aconitate
        RDA_090917MeKO_05_10_ID310
Aconitic acid, cis- (3TMS)
        090917MeKO_05_10_ID133
Alanine (2TMS)
        090917MeKO_05_10_ID023
Alanine, 3-cyano-, L- (2TMS)
        090917MeKO_05_10_ID081
Alanine, beta- (3TMS)
        090917MeKO_05_10_ID087
Arginine, DL-, -NH3 (3TMS)
        090917MeKO_05_10_ID143
Asparagine [-H2O] (2TMS)
        090917MeKO_05_10_ID098
Asparagine, DL- (3TMS)
        090917MeKO_05_10_ID124
Aspartic acid, DL- (3TMS)
        090917MeKO_05_10_ID099
Butyric acid, 4-amino- (3TMS)
        090917MeKO_05_10_ID105
Caffeic acid, trans- (3TMS)
        090917MeKO_05_10_ID173
Citric acid (4TMS)
        090917MeKO_05_10_ID141
cysteine
        RDA_090917MeKO_05_10_ID298
Cystine, L- (4TMS)
        090917MeKO_05_10_ID187
Dihydrouracil (2TMS)
        090917MeKO_05_10_ID030
Fructose, D- (1MEOX) (5TMS)
        090917MeKO_05_10_ID150
Fructose-6-phosphate (1MEOX) (6TMS)
        090917MeKO_05_10_ID186
Fumaric acid (2TMS)
        090917MeKO_05_10_ID073
Galactinol (9TMS)
        090917MeKO_05_10_ID241
Galacturonic acid, D- (1MEOX) (5TMS)
        090917MeKO_05_10_ID161
Gluconic acid (6TMS)
        090917MeKO_05_10_ID164
Glucose-6-phosphate (1MEOX) (6TMS)
        090917MeKO_05_10_ID189
Glucose1
        RDA_090917MeKO_05_10_ID282
Glutamate
        RDA_090917MeKO_05_10_ID281
Glutamine [-H2O] (3TMS) MP
        090917MeKO_05_10_ID112
Glutamine, DL- (3TMS)
        090917MeKO_05_10_ID137
Glutaric acid (2TMS)
        090917MeKO_05_10_ID085
Glutaric acid, 2-oxo- (1MEOX) (2TMS)
        090917MeKO_05_10_ID107
Glyceric acid, DL- (3TMS)
        090917MeKO_05_10_ID069
Glycine (3TMS)
        090917MeKO_05_10_ID065
Glycolic acid (2TMS)
        090917MeKO_05_10_ID018
Hexadecanoate
        RDA_090917MeKO_05_10_ID285
histidine
        RDA_090917MeKO_05_10_ID292
Homoserine, DL- (3TMS)
        090917MeKO_05_10_ID088
Hydroxylamine (3TMS)
        090917MeKO_05_10_ID026
Inositol, myo- (6TMS)
        090917MeKO_05_10_ID170
Inositol-1-phosphate, myo- (7TMS)
        090917MeKO_05_10_ID201
Isocitric acid, DL- (4TMS)
        090917MeKO_05_10_ID140
Isoleucine, L- (2TMS)
        090917MeKO_05_10_ID062
Lactate
        RDA_090917MeKO_05_10_ID296
leucine
        RDA_090917MeKO_05_10_ID288
Lumichrome (2MEOX)
        090917MeKO_05_10_ID072
Lysine (4TMS)
        090917MeKO_05_10_ID157
M000000_A123002-101_CONT_1228.8_EIQTMS
        090917MeKO_05_10_ID033
M000000_A144004-101_MST_1430.7_EIQTMS
        090917MeKO_05_10_ID086
M000000_A148006-101_MST_1480.5_EITTMS
        090917MeKO_05_10_ID091
M000000_A159003-101_MST_1585.2_EITTMS
        090917MeKO_05_10_ID109
M000000_A174001-101_MST_1744.8_EITTMS
        090917MeKO_05_10_ID132
M000000_A177004-101_MST_1770.9_EITTMS
        090917MeKO_05_10_ID136
M000000_A180004-101_MST_1795.4_EITTMS
        090917MeKO_05_10_ID131
M000000_A206002-101_MST_2066.3_EITTMS_
        090917MeKO_05_10_ID169
M000000_A211001-101_MST_2105.7_EITTMS
        090917MeKO_05_10_ID171
M000000_A218002-101_MST_2182.9_EITTMS
        090917MeKO_05_10_ID176
M000000_A237002-101_MST_2370.2_EITTMS
        090917MeKO_05_10_ID196
M000000_A250001-101_MST_2495.5_EITTMS
        090917MeKO_05_10_ID205
M000000_A251003-101_MST_2507.9_EITTMS
        090917MeKO_05_10_ID207
M000000_A301003-101_MST_3008.8_EITTMS
        090917MeKO_05_10_ID242
M000000_A301003-101_MST_3033.1_EIQTMS
        090917MeKO_05_10_ID236
M000000_A307002-101_MST_3068_EITTMS
        090917MeKO_05_10_ID217
M000000_A313001-101_MST_3139.9_EIQTMS
        090917MeKO_05_10_ID249
Malic acid, DL- (3TMS)
        090917MeKO_05_10_ID094
Maltitol (9TMS)
        090917MeKO_05_10_ID214
Maltose, D- (1MEOX) (8TMS)
        090917MeKO_05_10_ID225
Mannose, D- (1MEOX) (5TMS)
        090917MeKO_05_10_ID151
Methionine, DL- (2TMS)
        090917MeKO_05_10_ID102
nicotianamine
        RDA_090917MeKO_05_10_ID311
Nicotinic acid (1TMS)
        090917MeKO_05_10_ID064
Octadecadienoic acid, 9,12-(Z,Z)-, n- (1TMS)
        090917MeKO_05_10_ID180
Octadecatrienoic acid, 9,12,15-(Z,Z,Z)-, n- (1TMS)
        090917MeKO_05_10_ID181
Ornithine, DL- (4TMS)
        090917MeKO_05_10_ID142
Phenylalanine, DL- (2TMS)
        090917MeKO_05_10_ID120
Phosphoric acid (3TMS)
        090917MeKO_05_10_ID057
Phytol (1TMS)
        090917MeKO_05_10_ID177
Piperidin-2-one, 3-amino- (2TMS)
        090917MeKO_05_10_ID090
proline
        RDA_090917MeKO_05_10_ID278
Propane, 1,3-diamino- (4TMS)
        090917MeKO_05_10_ID122
PR_MST_Acid (Hexuronic, lactone)_1820.5
        090917MeKO_05_10_ID144
PR_MST_N-containing_1237.8
        090917MeKO_05_10_ID053
putrescine
        RDA_090917MeKO_05_10_ID284
Pyridine, 2-hydroxy- (1TMS)
        090917MeKO_05_10_ID009
Pyroglutamate
        RDA_090917MeKO_05_10_ID280
Quinic acid, D(-)- (5TMS)
        090917MeKO_05_10_ID148
Ribitol, D- (5TMS)
        090917MeKO_05_10_ID128
Ribose, D- (1MEOX) (4TMS)
        090917MeKO_05_10_ID123
Serine, L- (3TMS)
        090917MeKO_05_10_ID075
Shikimic acid (4TMS)
        090917MeKO_05_10_ID139
Sinapate
        RDA_090917MeKO_05_10_ID304
Sitosterol, beta- (1TMS)
        090917MeKO_05_10_ID261
Spermidine (5TMS)
        090917MeKO_05_10_ID184
Suberic acid (2TMS)
        090917MeKO_05_10_ID126
Succinic acid (2TMS)
        090917MeKO_05_10_ID068
sucrose
        RDA_090917MeKO_05_10_ID283
Threonic acid (4TMS)
        090917MeKO_05_10_ID106
Threonine, DL- (3TMS)
        090917MeKO_05_10_ID083
Tocopherol, alpha- (1TMS)
        090917MeKO_05_10_ID252
Trehalose, alpha,alpha'-, D- (8TMS)
        090917MeKO_05_10_ID223
Tryptamine (3TMS)
        090917MeKO_05_10_ID182
Tryptamine, 5-hydroxy- (4TMS)
        090917MeKO_05_10_ID206
Tyrosine, L- (3TMS)
        090917MeKO_05_10_ID159
Valine, DL- (2TMS)
        090917MeKO_05_10_ID048

Volcano Plot?

Sample 1:

Sample 2: