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Zea mays Species Overview

Experiment: Seed germination (Seed germination (B73 and Mo17 lines harvested 0-36 hours post-imbibition))

Sample Name ReplicatesDescription
B73-03
B73-123
B73-12 (Embryo)3
B73-12 (Endosperm)3
B73-12 (Pericarp)3
B73-12 (Tip cap)3
B73-12 (Whole seed)3
B73-243
B73-363
B73-36 (Embryo)3
B73-36 (Endosperm)3
B73-36 (Pericarp)3
B73-36 (Tip cap)3
B73-36 (Whole seed)3
Mo17-03
Mo17-123
Mo17-12 (Embryo)3
Mo17-12 (Endosperm)3
Mo17-12 (Pericarp)3
Mo17-12 (Tip cap)3
Mo17-12 (Whole seed)3
Mo17-243
Mo17-363
Mo17-36 (Embryo)3
Mo17-36 (Endosperm)3
Mo17-36 (Pericarp)3
Mo17-36 (Tip cap)3
Mo17-36 (Whole seed)3

3 Platforms

Platform: LC-MS based targeted Amino acids analysis [Nikolau lab]

+ Platform description

Platform: GC-MS based TMP whole seed analysis [Nikolau lab]

+ Platform description

Platform: GC-MS based TMP dissected seed analysis [Nikolau lab]

+ Platform description


Metabolite Search

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Chemically defined metabolites in this experiment:

1,2,3-Trihydroxy-benzene
        1,2,3-Trihydroxy-benzene or pyrogallol (3TMS)
1,6-anhydroglucose
        1,6-Anhydroglucose (3TMS)
1-O-trans-p-Coumaroylglycerol
        1-O-trans-p-Coumaroylglycerol (3TMS)
2,3-Butanediol
        2,3-Butanediol (2TMS)
2-(Methoxyimino)-propanoic acid
        2-(Methoxyimino)-propanoic acid (1TMS)
2-aminoadipic acid
        2-Aminoadipic acid (3TMS)
2-aminobutyric acid
        2-Aminobutyric acid (2TMS)
2-Ethylhexanoic acid
        2-Ethylhexanoic acid (1TMS)
2-Hydroxy acetic acid
        2-Hydroxy acetic acid (2TMS)
2-Oxo-propanoic acid
        2-Oxo-propanoic acid (2TMS)
2-pyrrolidinone
        2-Pyrrolidinone (1TMS)
3-Hydroxyisobutyric acid
        3-Hydroxyisobutyric acid (2TMS)
4-aminobutanoic acid
        4-Aminobutanoic acid (3TMS)
4-ethoxy-benzoic acid ethyl ester
        ethyl 4-ethoxybenzoate
4-Hydroxybenzeneacetic acid
        4-Hydroxybenzeneacetic acid (2TMS)
4-hydroxybutanoic acid
        4-Hydroxybutanoic acid (2TMS)
5-Hydroxynorvaline
        5-Hydroxynorvaline (3TMS)
6-deoxy-mannose
        rhamnose
Aconitic acid
        Aconitic acid (Z) (3TMS)
adenine
        Adenine (2TMS)
adenosine
        Adenosine (4TMS)
alanine
        Alanine (2TMS, 2TMS, 3TMS)
asparagine
        Asparagine (2TMS, 3TMS, 4TMS)
aspartic acid
        Aspartic acid (2TMS, 3TMS)
Beta-Lactic acid
        Beta-Lactic acid (2TMS)
butanedioic acid
        Butanedioic acid (2TMS)
cellobiose
        Cellobiose (8TMS)
coumaric acid
        4-Coumaric acid (2TMS)
cysteine
        L-Cysteine (3TMS)
D-glucose
        D-Glucose (5TMS)
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2005.0-147-217-361
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2032.5-217-361
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2224.0-204-217-361
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2248.4-204-217-361
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2259.8-204-217-361
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2445.3-217-292-375
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2530.3-204-361-379
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2579.2-217-273-361
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2618.8-217-361-437
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2640.6-204-219-361
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2686.4-217-361-437
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2735.6-204-217-361
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2761.5-292-359-539
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2817.8-204-361-598
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2823.8-194-204-361
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2848.8-217-361-598
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2874.6-217-361-451
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2891.8-217-361-685
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2898.4-307-319-361
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2900.4-204-217-361
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2945.6-217-361-539
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2951.9-204-217-361
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-2975.5-217-361-539
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-3150.9-204-361-523
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-3434.3-204-217-361-583
Disaccharide
        BJN-GCMS-Maize-Seed-Polar-3469.0-217-361-451
erythritol
        Erythritol or Butane, 1,2,3,4-tetrakis[(trimethylsilyl)oxy] (4TMS)
Ethanedioic acid
        Ethanedioic acid (2TMS)
ethanolamine
        Ethanolamine (3TMS)
ferulic acid
        Ferulic acid (2TMS)
fructose
        Fructose (5TMS)
Galactaric acid
        Galactaric acid (6TMS)
gluconic acid
        D-Gluconic acid (6TMS)
glutamic acid
        L-Glutamic acid (3TMS)
glyceric acid
        Glyceric acid (3TMS)
glycerol
        Glycerol (3TMS)
glycerol-3-phosphate
        Glycerol-3-phosphate (4TMS)
glycine
        Glycine (2TMS, 3TMS)
guanine
        N,9-bis(Trimethylsilyl)-6-[(trimethylsilyl)oxy]-9H-purin-2-amine (3TMS)
Hexose
        BJN-GCMS-Maize-Seed-Polar-1803.8-217-292-357
Hexose
        BJN-GCMS-Maize-Seed-Polar-1807.8-217-450
Hexose
        BJN-GCMS-Maize-Seed-Polar-1854.7-217-293-437
Hexose
        BJN-GCMS-Maize-Seed-Polar-1868.2-204-217-437
Hexose
        BJN-GCMS-Maize-Seed-Polar-1898.6-217-319-361
Hexose
        BJN-GCMS-Maize-Seed-Polar-1921.3-147-217-307
Hexose
        BJN-GCMS-Maize-Seed-Polar-1928.5-205-319-464
Hexose
        BJN-GCMS-Maize-Seed-Polar-1933.9-205-319-554
Hexose
        BJN-GCMS-Maize-Seed-Polar-1953.2-205-217-319
Hexose
        BJN-GCMS-Maize-Seed-Polar-1970.9-217-319-376
Hexose
        BJN-GCMS-Maize-Seed-Polar-1987.7-147-204-217
Hexose
        BJN-GCMS-Maize-Seed-Polar-2015.2-204-217-435
Hexose
        BJN-GCMS-Maize-Seed-Polar-2036.8-204-217-435
Hexose
        BJN-GCMS-Maize-Seed-Polar-2088.1-204-233-319
Hexose
        BJN-GCMS-Maize-Seed-Polar-2197.9-205-217-319
Hexose
        BJN-GCMS-Maize-Seed-Polar-2203.2-205-217-319
homoserine
        Homoserine (3TMS)
isoleucine
        Isoleucine (1TMS, 2TMS)
lactic acid
        Lactic acid (2TMS)
lactose
        Lactose (8TMS)
leucine
        L-Leucine (2TMS)
lysine
        Lysine (3TMS, 4TMS)
malic acid
        Malic acid (3TMS)
malonic acid
        Malonic acid (2TMS)
methionine
        L-Methionine (2TMS)
methyl pentopyranoside
        methyl lyxopyranoside
methylene-butanedioic acid
        Methylene-butanedioic acid (2TMS)
myo-Inositol
        Myo-Inositol (6TMS)
ornithine
        Ornithine (3TMS, 4TMS)
oxalic acid
        Oxalic acid (2TMS)
Oxoproline (Pyroglutamic acid)
        L-5-Oxoproline ( Pyroglutamic acid) (2TMS)
Pentose
        BJN-GCMS-Maize-Seed-Polar-1567.6-217-279-307
Pentose
        BJN-GCMS-Maize-Seed-Polar-1675.8-204-217-307
Pentose
        BJN-GCMS-Maize-Seed-Polar-1686.1-217-307-452
Pentose
        BJN-GCMS-Maize-Seed-Polar-1692.2-217-307-452
Pentose
        BJN-GCMS-Maize-Seed-Polar-1694.7-217-307-348
Pentose
        BJN-GCMS-Maize-Seed-Polar-1703.1-147-217-307
Pentose
        BJN-GCMS-Maize-Seed-Polar-1724.6-217-307-467
Pentose
        BJN-GCMS-Maize-Seed-Polar-1790.1-217-244-451
Pentose
        BJN-GCMS-Maize-Seed-Polar-2995.6-147-217-307
phenylalanine
        L-Phenylalanine (2TMS)
Phosphate
        Phosphate (2TMS, 3TMS)
pipecolic acid
        Pipecolic acid (1TMS, 2TMS)
proline
        Proline (1TMS, 2TMS)
Quinic acid
        Quinic acid (5TMS)
serine
        Serine (2TMS, 3TMS)
sorbitol
        D-Sorbitol (6TMS)
Sterol
        BJN-GCMS-Maize-Seed-Polar-3276.0-215-369-474
Sterol
        BJN-GCMS-Maize-Seed-Polar-3322.9-296-386
Sterol
        BJN-GCMS-Maize-Seed-Polar-3362.6-215-473-488
sucrose
        Sucrose (8TMS)
Tetrose
        BJN-GCMS-Maize-Seed-Polar-1967.4-205-273-507
threonine
        Threonine (2TMS, 3TMS)
thymine
        Pyrimidine, 5-methyl-2,4-bis[(trimethylsilyl)oxy] (2TMS)
Tryptophan
        L-Tryptophan (3TMS)
tyrosine
        L-Tyrosine (3TMS)
Unknown
        BJN-GCMS-Maize-Seed-Polar-1083.9-147-214-283
Unknown
        BJN-GCMS-Maize-Seed-Polar-1146.9-116-147-258
Unknown
        BJN-GCMS-Maize-Seed-Polar-1391.5-141
Unknown
        BJN-GCMS-Maize-Seed-Polar-1479.1(1504.7)-117-232-349 (2TMS, 3TMS)
Unknown
        BJN-GCMS-Maize-Seed-Polar-1496-73-147-155
Unknown
        BJN-GCMS-Maize-Seed-Polar-1497.3-147-218-320
Unknown
        BJN-GCMS-Maize-Seed-Polar-1519.5-100-115-243
Unknown
        BJN-GCMS-Maize-Seed-Polar-1522.7-147-217-307
Unknown
        BJN-GCMS-Maize-Seed-Polar-1530.6-174-261-276
Unknown
        BJN-GCMS-Maize-Seed-Polar-1541.7-128-176-293
Unknown
        BJN-GCMS-Maize-Seed-Polar-1560.5-120-147-245
Unknown
        BJN-GCMS-Maize-Seed-Polar-1562.7-171-314-329
Unknown
        BJN-GCMS-Maize-Seed-Polar-1573.9-191-320-348
Unknown
        BJN-GCMS-Maize-Seed-Polar-1574-147-219-321
Unknown
        BJN-GCMS-Maize-Seed-Polar-1597.7-147-292-313
Unknown
        BJN-GCMS-Maize-Seed-Polar-1601.6-142-186-349
Unknown
        BJN-GCMS-Maize-Seed-Polar-1652.4-217
Unknown
        BJN-GCMS-Maize-Seed-Polar-1672.9-191-271-286
Unknown
        BJN-GCMS-Maize-Seed-Polar-1688.2-217-231-245
Unknown
        BJN-GCMS-Maize-Seed-Polar-1713.7-147-245-335
Unknown
        BJN-GCMS-Maize-Seed-Polar-1727.7-218-320-437
Unknown
        BJN-GCMS-Maize-Seed-Polar-1813.0-217-292-333
Unknown
        BJN-GCMS-Maize-Seed-Polar-1870.5-292-305-333
Unknown
        BJN-GCMS-Maize-Seed-Polar-1927.6-147-331-431
Unknown
        BJN-GCMS-Maize-Seed-Polar-1932.8-189-273-363
Unknown
        BJN-GCMS-Maize-Seed-Polar-1938.5-205-273-492
Unknown
        BJN-GCMS-Maize-Seed-Polar-1947-205-319-422
Unknown
        BJN-GCMS-Maize-Seed-Polar-1957.6-205-273-508
Unknown
        BJN-GCMS-Maize-Seed-Polar-1972.8-147-205-288
Unknown
        BJN-GCMS-Maize-Seed-Polar-1980.9-147-205-289
Unknown
        BJN-GCMS-Maize-Seed-Polar-1982.3-205-375-463
Unknown
        BJN-GCMS-Maize-Seed-Polar-1992.4-205-419
Unknown
        BJN-GCMS-Maize-Seed-Polar-1992.6-319-421
Unknown
        BJN-GCMS-Maize-Seed-Polar-1995.0-205-292-567
Unknown
        BJN-GCMS-Maize-Seed-Polar-1999.3-147-205-333
Unknown
        BJN-GCMS-Maize-Seed-Polar-2006.7-243-257-461
Unknown
        BJN-GCMS-Maize-Seed-Polar-2107.4-259-359-479
Unknown
        BJN-GCMS-Maize-Seed-Polar-2270.5-211-299-342
Unknown
        BJN-GCMS-Maize-Seed-Polar-2282.7-205-307-319
Unknown
        BJN-GCMS-Maize-Seed-Polar-2287.2-291-363-582
Unknown
        BJN-GCMS-Maize-Seed-Polar-2297.5-144-174-303
Unknown
        BJN-GCMS-Maize-Seed-Polar-2314.2-204-217
Unknown
        BJN-GCMS-Maize-Seed-Polar-2329.8-217-307-321
Unknown
        BJN-GCMS-Maize-Seed-Polar-2365.4-204-217-305
Unknown
        BJN-GCMS-Maize-Seed-Polar-2370.1-204-217
Unknown
        BJN-GCMS-Maize-Seed-Polar-2377.2-217-259-321
Unknown
        BJN-GCMS-Maize-Seed-Polar-2380.9-315-387-459
Unknown
        BJN-GCMS-Maize-Seed-Polar-2393.3-204-233-277
Unknown
        BJN-GCMS-Maize-Seed-Polar-2411.9-299-315
Unknown
        BJN-GCMS-Maize-Seed-Polar-2417.5-204-217-375
Unknown
        BJN-GCMS-Maize-Seed-Polar-2449.8-204-217-351
Unknown
        BJN-GCMS-Maize-Seed-Polar-2494.1-217-299-318
Unknown
        BJN-GCMS-Maize-Seed-Polar-2496.3-259-349-509
Unknown
        BJN-GCMS-Maize-Seed-Polar-2554.4-204-261-361
Unknown
        BJN-GCMS-Maize-Seed-Polar-2558.3-147-217-446
Unknown
        BJN-GCMS-Maize-Seed-Polar-2585.9-147-217-446
Unknown
        BJN-GCMS-Maize-Seed-Polar-2600.6-142-218-610
Unknown
        BJN-GCMS-Maize-Seed-Polar-2607.2-204-217-361
Unknown
        BJN-GCMS-Maize-Seed-Polar-2626.3-205-307-319
Unknown
        BJN-GCMS-Maize-Seed-Polar-2649.2-259-319-566
Unknown
        BJN-GCMS-Maize-Seed-Polar-2733.0-307-439-542
Unknown
        BJN-GCMS-Maize-Seed-Polar-2744.9-217-271-449
Unknown
        BJN-GCMS-Maize-Seed-Polar-2769.0-259-349-480
Unknown
        BJN-GCMS-Maize-Seed-Polar-2836.3-217-345-361
Unknown
        BJN-GCMS-Maize-Seed-Polar-2865.8-217-361-437
Unknown
        BJN-GCMS-Maize-Seed-Polar-2885.9-296-319-361
Unknown
        BJN-GCMS-Maize-Seed-Polar-2909.4-217-307
Unknown
        BJN-GCMS-Maize-Seed-Polar-2925.2-147-204-307
Unknown
        BJN-GCMS-Maize-Seed-Polar-2929.5-218-361
Unknown
        BJN-GCMS-Maize-Seed-Polar-2975.1-204-217-361
Unknown
        BJN-GCMS-Maize-Seed-Polar-2981.7-204-217-345
Unknown
        BJN-GCMS-Maize-Seed-Polar-2996.7-204-217-361
Unknown
        BJN-GCMS-Maize-Seed-Polar-3013.4-204-217-479
Unknown
        BJN-GCMS-Maize-Seed-Polar-3044.7-217-361-513
Unknown
        BJN-GCMS-Maize-Seed-Polar-3051.0-204-217-259
Unknown
        BJN-GCMS-Maize-Seed-Polar-3150.5-204-217-361
Unknown
        BJN-GCMS-Maize-Seed-Polar-3204.9-204-361-597
Unknown
        BJN-GCMS-Maize-Seed-Polar-3218.1-204-217-361-450
Unknown
        BJN-GCMS-Maize-Seed-Polar-3240.3-217-361
Unknown
        BJN-GCMS-Maize-Seed-Polar-3319.4-217-361-437
Unknown
        BJN-GCMS-Maize-Seed-Polar-332.3-204-217-361-437
Unknown
        BJN-GCMS-Maize-Seed-Polar-3359.6-204-217-361
Unknown
        BJN-GCMS-Maize-Seed-Polar-3383.9-217-361-437
Unknown
        BJN-GCMS-Maize-Seed-Polar-3442.4-217-361-437
Unknown
        BJN-GCMS-Maize-Seed-Polar-3501.5-217-271-361
Unknown
        BJN-GCMS-Maize-Seed-Polar-3501.6-204-217-361-451
Unknown
        BJN-GCMS-Maize-Seed-Polar-3535.6-271-361-437
Unknown
        BJN-GCMS-Maize-Seed-Polar-3580.0-271-361
uridine
        Uridine (3TMS, 4TMS)
valine
        Valine (1TMS, 2TMS)
Vanillic acid
        Vanillic Acid (2TMS)
1-monopalmitin
18-methyl-nonadecane-1,2-diol
2,3-Butanediol
2-hexenedioic acid
2-pyrrolidinone
4-aminobutanoic acid
9-octadecynenitrile
9E,12E-octadecadienoic acid
alanine
alpha-tocopherol
arachic acid
arginine
asparagine
aspartic acid
Beta-D-galactofuranose
campesterol
cellobiose
citric acid
Citric acid (4TMS)
coumaric acid
erythritol
ethanolamine
ferulic acid
fructose
fumaric acid
Fumaric acid (2TMS)
Galactinol (9TMS)
gamma-tocopherol
glucose
glutamic acid
glutamine
glyceric acid
glycerol-3-phosphate
glycine
hexadecanenitrile
histidine
homocysteine
hydroxycarbamic acid
isoleucine
Itaconic acid
lactose
leucine
levoglucosan
linoleic acid
linolenic acid
lysine
malic acid
methionine
methyl linoleate
methyl oleate
myo-Inositol
Nicotinic acid (1TMS)
oleanitrile
oleic acid
palmitic acid
Palmitoleic acid
phenylalanine
phosphenodiimidic amide
proline
pyruvic acid
serine
sitosterol
sorbitol
squalene
stearic acid
stigmasterol
succinic acid
sucrose
talose
tetracosanoic acid
threonine
tryptophane
tyrosine
Urea (2TMS)
valine

Volcano Plot?

Sample 1:

Sample 2: