Wurtele Lab

     Functional Genomics Tools

(Site Archive)

MetNet is software to visualize, explore, statistically analyze and model transcriptomics, proteomics and metabolomics data in the context of a growing metabolic and regulatory network map of Arabidopsis, Soybean, and other species.

National Science Foundation
Orphan Genes: An Untapped Genetic Reservoir of Novel Traits Driving Evolutionary Adaptation and Crop Improvement
Eve Syrkin Wurtele (PI), Kevin Bassler (Co-PI)

           MetaOmGraph

MetaOmGraph (MOG) is a Java software to interactively explore and visualize large datasets.
GitHub
Paper (NAR: gkz1209)
PrePrint

           Phylostratr

A framework for phylostratigraphy
GitHub
Paper (published in Bioinformatics)

           Synder

Map intervals on one genome to search spaces on another genome using a synteny map
GitHub
PrePrint

           Fagin

A pipeline for the classification of orphans into origin classes using a syntenic filter
GitHub
Manuscript submitted.