Update: MetaOmGraph is now published in Nucleic Acids Research

Wurtele Lab

     Functional Genomics Tools

MetNet is software to visualize, explore, statistically analyze and model transcriptomics, proteomics and metabolomics data in the context of a growing metabolic and regulatory network map of Arabidopsis, Soybean, and other species.

NSF logo National Science Foundation
Orphan Genes: An Untapped Genetic Reservoir of Novel Traits Driving Evolutionary Adaptation and Crop Improvement
Eve Syrkin Wurtele (PI), Kevin Bassler (Co-PI)

           MetaOmGraph

MetaOmGraph (MOG) is a Java software to interactively explore and visualize large datasets.
GitHub
PrePrint

           Phylostratr

A framework for phylostratigraphy
GitHub
Paper (published in Bioinformatics)

           Synder

Map intervals on one genome to search spaces on another genome using a synteny map
GitHub
PrePrint

           Fagin

A pipeline for the classification of orphans into origin classes using a syntenic filter
GitHub
Manuscript submitted.

           PMR

Plant and Microbial Metabolomics Resource

           MetaVenn

Identify inclusion relations between multiple datasets and extracts shared members.

           AtGeneSearch

Gene annotations